Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G30260.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT3G30260.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT3G30260.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT3G30260.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85287 | Canola | nucleus | 77.67 | 81.82 |
| CDY45899 | Canola | nucleus | 92.89 | 73.49 |
| CDX86353 | Canola | nucleus | 77.67 | 61.45 |
| CDY00082 | Canola | nucleus | 76.14 | 60.48 |
| AT3G30260.1 | Thale cress | nucleus | 70.05 | 55.42 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 39.59 | 31.58 |
| Solyc02g089210.2.1 | Tomato | nucleus | 37.06 | 29.2 |
| PGSC0003DMT400003485 | Potato | nucleus | 35.53 | 28.34 |
| CDY36077 | Canola | nucleus | 31.47 | 28.05 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 34.52 | 27.42 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 33.5 | 27.27 |
| CDY34564 | Canola | nucleus | 29.95 | 27.06 |
| PGSC0003DMT400068325 | Potato | nucleus | 31.98 | 26.92 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 33.5 | 26.83 |
| CDY19977 | Canola | nucleus | 13.71 | 26.47 |
| CDY65811 | Canola | nucleus | 32.99 | 25.39 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 31.98 | 25.2 |
| EER97510 | Sorghum | nucleus | 31.98 | 24.9 |
| Zm00001d022088_P004 | Maize | nucleus | 32.49 | 24.81 |
| Solyc02g065730.1.1 | Tomato | nucleus | 29.44 | 24.79 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 32.99 | 24.71 |
| CDX95960 | Canola | nucleus | 31.98 | 24.61 |
| CDY33554 | Canola | nucleus | 31.98 | 24.61 |
| KRH18331 | Soybean | nucleus | 29.95 | 24.18 |
| CDY58690 | Canola | nucleus | 29.44 | 24.07 |
| KRG93701 | Soybean | nucleus | 29.44 | 23.77 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 29.44 | 23.77 |
| Os07t0605200-01 | Rice | nucleus | 29.95 | 23.69 |
| CDY02185 | Canola | nucleus | 28.93 | 23.65 |
| CDY16832 | Canola | nucleus | 28.93 | 23.65 |
| Os03t0752800-02 | Rice | nucleus | 29.44 | 23.58 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 27.41 | 23.48 |
| CDY42841 | Canola | nucleus | 28.43 | 23.33 |
| EER90862 | Sorghum | nucleus | 28.93 | 23.27 |
| Zm00001d018667_P003 | Maize | nucleus | 31.98 | 23.25 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 29.95 | 23.23 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 29.44 | 23.11 |
| EER95753 | Sorghum | nucleus | 31.47 | 22.96 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 30.96 | 22.85 |
| CDY47002 | Canola | nucleus | 27.92 | 22.82 |
| CDY04265 | Canola | nucleus | 31.98 | 22.74 |
| KRH45099 | Soybean | nucleus | 28.43 | 22.58 |
| CDY45709 | Canola | nucleus | 19.8 | 22.54 |
| CDY49686 | Canola | nucleus | 19.8 | 22.54 |
| Os07t0108900-02 | Rice | nucleus | 30.46 | 22.47 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 30.46 | 22.47 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 30.46 | 22.47 |
| GSMUA_Achr10P... | Banana | nucleus | 32.49 | 22.46 |
| CDY07357 | Canola | nucleus | 32.49 | 22.15 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 30.46 | 22.14 |
| KRH01382 | Soybean | nucleus | 28.43 | 22.13 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 27.41 | 22.04 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 30.46 | 21.9 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 30.46 | 21.9 |
| CDX84935 | Canola | nucleus | 27.41 | 21.51 |
| CDY27603 | Canola | nucleus | 27.41 | 21.34 |
| CDY65347 | Canola | nucleus | 16.75 | 20.89 |
| CDY11824 | Canola | nucleus | 25.89 | 20.82 |
| Zm00001d013259_P002 | Maize | nucleus | 29.44 | 20.79 |
| Os12t0501700-00 | Rice | nucleus | 24.37 | 20.6 |
| CDY66153 | Canola | nucleus | 25.38 | 20.41 |
| CDY01574 | Canola | nucleus | 12.69 | 20.33 |
| Zm00001d007949_P001 | Maize | nucleus | 30.96 | 20.0 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 26.9 | 19.92 |
| CDY53885 | Canola | nucleus | 25.89 | 19.84 |
| CDY15724 | Canola | nucleus | 25.38 | 19.84 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 30.46 | 19.61 |
| CDY57524 | Canola | nucleus | 24.87 | 19.6 |
| CDY26462 | Canola | nucleus | 24.87 | 19.29 |
| CDY43239 | Canola | nucleus | 24.37 | 19.2 |
| CDY51202 | Canola | nucleus | 24.87 | 19.07 |
| KXG23502 | Sorghum | nucleus | 21.32 | 18.83 |
| CDY02978 | Canola | nucleus | 24.37 | 18.75 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 28.93 | 18.57 |
| CDX69499 | Canola | nucleus | 24.87 | 18.56 |
| CDY03905 | Canola | nucleus | 25.38 | 18.52 |
| Zm00001d023736_P001 | Maize | nucleus | 23.86 | 18.29 |
| CDY34718 | Canola | nucleus | 23.35 | 18.25 |
| Zm00001d034045_P003 | Maize | nucleus | 26.9 | 18.21 |
| CDX70651 | Canola | nucleus | 23.86 | 18.15 |
| CDX78653 | Canola | nucleus | 23.86 | 18.15 |
| CDY18911 | Canola | nucleus | 21.83 | 18.14 |
| CDX74754 | Canola | nucleus | 23.35 | 17.97 |
| CDY13236 | Canola | mitochondrion | 18.27 | 17.91 |
| CDY04164 | Canola | nucleus | 22.84 | 17.44 |
| CDY18912 | Canola | nucleus | 20.3 | 16.6 |
| CDY49287 | Canola | nucleus | 18.78 | 15.42 |
| CDX98330 | Canola | nucleus | 19.29 | 15.32 |
| CDY33113 | Canola | nucleus | 23.86 | 15.21 |
| CDX89097 | Canola | nucleus | 18.78 | 15.04 |
| CDX75412 | Canola | nucleus | 18.27 | 15.0 |
| CDX69036 | Canola | nucleus | 17.77 | 14.58 |
| CDX72465 | Canola | nucleus | 17.77 | 14.58 |
| CDX69345 | Canola | nucleus | 16.75 | 14.54 |
| CDY09267 | Canola | nucleus | 18.27 | 14.46 |
| CDX75686 | Canola | nucleus | 16.75 | 14.41 |
| CDX90394 | Canola | nucleus | 16.75 | 14.41 |
| CDY48451 | Canola | nucleus | 11.17 | 14.38 |
| CDX79857 | Canola | nucleus | 17.77 | 14.34 |
| CDX98597 | Canola | nucleus | 18.27 | 14.34 |
| CDX78909 | Canola | nucleus | 18.27 | 14.29 |
| CDX89005 | Canola | nucleus | 19.8 | 14.13 |
| CDX90741 | Canola | nucleus | 16.24 | 13.85 |
| CDY00589 | Canola | nucleus | 19.29 | 13.82 |
| CDY49254 | Canola | nucleus | 18.78 | 13.45 |
| CDY71878 | Canola | endoplasmic reticulum | 17.77 | 13.31 |
| CDY25613 | Canola | nucleus | 15.23 | 13.16 |
| CDX89496 | Canola | nucleus | 14.72 | 12.66 |
| CDX99406 | Canola | nucleus | 18.27 | 11.54 |
| CDX67765 | Canola | nucleus | 19.29 | 10.92 |
| CDX71922 | Canola | nucleus | 7.11 | 10.37 |
| CDY60297 | Canola | nucleus | 15.23 | 10.27 |
| CDY42485 | Canola | nucleus | 19.29 | 10.05 |
| CDX71166 | Canola | nucleus | 15.74 | 8.91 |
| CDY65346 | Canola | cytosol | 1.02 | 8.0 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 0.51 | 1.49 |
| CDX79856 | Canola | nucleus | 0.0 | 0.0 |
| CDY72391 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:A0A078HBJ6 | UniProt:A0A078HBJ6 | EnsemblPlants:CDY35780 | ProteinID:CDY35780 | ProteinID:CDY35780.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00059240001 | InterPro:IPR002487 | PFAM:PF01486 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF244 | InterPro:TF_Kbox | UniParc:UPI0004EE283A | SEG:seg | : | : |
Description
BnaC02g38140DBnaC02g38140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBJ6]
Coordinates
chrLK032360:-:226142..227734
Molecular Weight (calculated)
22490.9 Da
IEP (calculated)
6.248
GRAVY (calculated)
-0.758
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MERILDRYER CSYAGQDIPT PSLDSQGECS TECSKLLRMI DAMQISLRHL KGEEVDALSI RELQSLEMQL DTSLRRTRSR KNQLMVESLA QLQKKEKELK
101: ELKKQLTKKV DQGEDIEPQN ISQGLDSTPP CETPHLLPGP ISPHPPLSIG HVHNVYRLCS TYRDTSQMNE VGEEDTGILI RSRNTTLPHW MPRLTGE
101: ELKKQLTKKV DQGEDIEPQN ISQGLDSTPP CETPHLLPGP ISPHPPLSIG HVHNVYRLCS TYRDTSQMNE VGEEDTGILI RSRNTTLPHW MPRLTGE
001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE
Arabidopsis Description
AGL79AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.