Factsheet for Solyc02g065730.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G30260.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G30260.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G30260.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G30260.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G30260.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G30260.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT3G30260.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT3G30260.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT3G30260.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT3G30260.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068325	Potato	nucleus	93.16	93.16
Solyc02g089210.2.1	Tomato	nucleus	67.09	62.8
CDY19977	Canola	nucleus	26.5	60.78
Bra025411.1-P	Field mustard	nucleus	44.02	58.52
VIT_14s0083g01030.t01	Wine grape	nucleus	59.4	56.28
Solyc03g114830.2.1	Tomato	nucleus	57.27	54.25
Solyc06g069430.2.1	Tomato	nucleus	55.13	52.65
GSMUA_Achr2P13650_001	Banana	nucleus	52.14	49.59
Solyc05g056620.1.1	Tomato	nucleus	51.71	49.59
KRH45099	Soybean	nucleus	51.71	48.79
TraesCS5A01G391700.1	Wheat	nucleus	50.43	48.36
KRG93701	Soybean	nucleus	50.43	48.36
GSMUA_Achr6P00050_001	Banana	nucleus	50.0	48.35
KRH18331	Soybean	nucleus	50.0	47.95
EER90862	Sorghum	nucleus	49.57	47.35
TraesCS5B01G396600.2	Wheat	nucleus	49.57	46.22
GSMUA_Achr4P23540_001	Banana	nucleus	48.72	45.97
GSMUA_Achr8P04330_001	Banana	nucleus	47.86	45.71
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	49.57	45.67
GSMUA_Achr7P00460_001	Banana	nucleus	48.72	45.6
GSMUA_Achr3P30440_001	Banana	nucleus	44.44	45.22
Os03t0752800-02	Rice	nucleus	47.44	45.12
EER97510	Sorghum	nucleus	48.29	44.66
CDY00082	Canola	nucleus	47.01	44.35
Bra036201.1-P	Field mustard	nucleus	47.01	44.35
KRH01382	Soybean	nucleus	47.86	44.27
CDX86353	Canola	nucleus	47.01	44.18
Os07t0605200-01	Rice	nucleus	47.01	44.18
AT3G30260.1	Thale cress	nucleus	47.01	44.18
TraesCS2D01G262700.1	Wheat	nucleus	50.85	43.91
TraesCS2B01G281000.1	Wheat	nucleus	50.85	43.43
TraesCS2A01G261200.2	Wheat	nucleus	50.85	43.43
CDY45899	Canola	nucleus	45.73	42.97
EER95753	Sorghum	nucleus	49.57	42.96
Zm00001d018667_P003	Maize	nucleus	49.57	42.8
Os07t0108900-02	Rice	nucleus	48.72	42.7
Zm00001d022088_P004	Maize	nucleus	47.01	42.64
TraesCS2B01G200800.1	Wheat	nucleus	48.29	42.32
TraesCS2D01G181400.3	Wheat	nucleus	48.29	42.32
TraesCS2A01G174300.3	Wheat	nucleus	48.29	42.32
Solyc12g038510.1.1	Tomato	nucleus	44.87	42.0
Zm00001d013259_P002	Maize	nucleus	49.57	41.58
Solyc04g005320.2.1	Tomato	nucleus	41.88	41.18
GSMUA_Achr10P...	Banana	nucleus	49.57	40.7
GSMUA_Achr3P02280_001	Banana	nucleus	45.3	40.3
GSMUA_Achr3P25280_001	Banana	nucleus	45.73	40.23
Solyc03g114840.2.1	Tomato	nucleus	41.88	39.84
Solyc05g015750.2.1	Tomato	nucleus	41.03	39.83
HORVU2Hr1G063800.7	Barley	nucleus, plastid	50.85	38.89
Solyc05g012020.2.1	Tomato	nucleus	40.17	38.84
Zm00001d034045_P003	Maize	nucleus	48.29	38.83
Solyc02g089200.2.1	Tomato	nucleus	40.17	38.21
Zm00001d007949_P001	Maize	nucleus	49.57	38.03
Solyc03g019710.2.1	Tomato	nucleus	28.63	37.85
HORVU5Hr1G095630.3	Barley	nucleus, plastid	48.72	37.13
Solyc01g093960.2.1	Tomato	nucleus	38.46	35.71
Os12t0501700-00	Rice	nucleus	34.62	34.76
Solyc11g028020.1.1	Tomato	nucleus	32.91	34.53
KXG23502	Sorghum	nucleus	32.05	33.63
Solyc02g091550.1.1	Tomato	nucleus	33.33	33.19
Zm00001d023736_P001	Maize	nucleus	35.47	32.3
CDX85287	Canola	nucleus	25.64	32.09
Solyc02g071730.2.1	Tomato	nucleus	33.76	31.85
CDY35780	Canola	nucleus	24.79	29.44
Solyc07g055920.2.1	Tomato	nucleus	32.91	28.84
Solyc01g106170.2.1	Tomato	mitochondrion	17.95	28.38
Solyc12g088090.1.1	Tomato	nucleus	20.09	21.17
Solyc06g064840.2.1	Tomato	nucleus	17.52	20.4
Solyc04g076700.2.1	Tomato	nucleus	11.11	19.7

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:K4B705	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF241
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc02g065730.1	EnsemblPlants:Solyc02g065730.1.1	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0002768DF2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:36882148..36886013

Molecular Weight (calculated)

27369.7 Da

IEP (calculated)

10.115

GRAVY (calculated)

-0.888

Length

234 amino acids

Sequence
(BLAST)

001: MGRGRVEMKR IENKISRQVT FSKRRSGLLK KTNEISVLCD AEVALIVFSS NGKLFEYSTQ SSMENILERY ENYSYEEMNL NTTYKENWTL EYPKLMARVE
101: LLQRNIRHFM GEDLDAFNLR EFRGLEKQLD TALKRVRSKK NQLMHESISQ LQKKEKELQQ RNNLISNKLK ENEKKQIVQT NPGQSSTMTF LLQSPTVTNQ
201: TIGGPSQATD QSQNRDGYNS LMPPWMFHHV HNKG

Best Arabidopsis Sequence Match ( AT5G60910.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE

Arabidopsis Description

AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.