Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g028020.1.1 | Tomato | nucleus | 72.64 | 65.47 |
| KRH64830 | Soybean | nucleus | 48.26 | 60.25 |
| KRH56460 | Soybean | nucleus | 53.23 | 48.2 |
| VIT_18s0041g01880.t01 | Wine grape | nucleus | 52.24 | 47.09 |
| Bra000696.1-P | Field mustard | nucleus | 48.76 | 42.42 |
| Bra037895.1-P | Field mustard | nucleus | 47.76 | 41.74 |
| GSMUA_Achr10P... | Banana | nucleus | 47.26 | 40.6 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 47.76 | 40.17 |
| CDY71878 | Canola | endoplasmic reticulum | 46.27 | 35.36 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 48.26 | 34.15 |
| Solyc02g071730.2.1 | Tomato | nucleus | 41.29 | 33.47 |
| Solyc07g055920.2.1 | Tomato | nucleus | 40.3 | 30.34 |
| AT4G09960.4 | Thale cress | nucleus | 47.76 | 29.18 |
| Solyc03g019710.2.1 | Tomato | nucleus | 22.89 | 25.99 |
| Solyc04g076700.2.1 | Tomato | nucleus | 16.42 | 25.0 |
| Solyc05g012020.2.1 | Tomato | nucleus | 27.86 | 23.14 |
| Solyc02g091550.1.1 | Tomato | nucleus | 26.87 | 22.98 |
| Solyc04g005320.2.1 | Tomato | nucleus | 25.87 | 21.85 |
| Solyc01g093960.2.1 | Tomato | nucleus | 26.37 | 21.03 |
| Solyc12g088090.1.1 | Tomato | nucleus | 22.89 | 20.72 |
| Solyc05g015750.2.1 | Tomato | nucleus | 24.38 | 20.33 |
| Solyc02g089200.2.1 | Tomato | nucleus | 24.88 | 20.33 |
| Solyc03g114840.2.1 | Tomato | nucleus | 24.88 | 20.33 |
| Solyc12g038510.1.1 | Tomato | nucleus | 24.38 | 19.6 |
| Solyc02g065730.1.1 | Tomato | nucleus | 20.4 | 17.52 |
| Solyc06g069430.2.1 | Tomato | nucleus | 19.9 | 16.33 |
| Solyc03g114830.2.1 | Tomato | nucleus | 19.4 | 15.79 |
| Solyc02g089210.2.1 | Tomato | nucleus | 19.4 | 15.6 |
| Solyc05g056620.1.1 | Tomato | nucleus | 17.91 | 14.75 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 7.46 | 10.14 |
| KRH64836 | Soybean | nucleus | 2.99 | 10.0 |
Protein Annotations
| MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002487 | UniProt:K4C7B4 | PFAM:PF01486 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF187 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc06g064840.2 | EnsemblPlants:Solyc06g064840.2.1 | InterPro:TF_Kbox |
| UniParc:UPI00027670E4 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:40421183..40426604
Molecular Weight (calculated)
23230.1 Da
IEP (calculated)
9.048
GRAVY (calculated)
-0.618
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSLFYVKLR LLLLFSPHVD ASMNTLTTSF IKATIERYKK ATAETSNACT TQELNAQFYQ QESKKLRQQI QMMQNSNRHL VGEGLSCLNV RELKQLENRL
101: ERGISRIRSK KHEMILAETE NLQKREILLE QENAFLRSKI AENERLQELS MMPAAGGQDY SAIQQYLARN MLQLNMMEGQ GVSSYDPLPP PHHDKKSLEL
201: Q
101: ERGISRIRSK KHEMILAETE NLQKREILLE QENAFLRSKI AENERLQELS MMPAAGGQDY SAIQQYLARN MLQLNMMEGQ GVSSYDPLPP PHHDKKSLEL
201: Q
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.