Factsheet for Solyc02g089200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106170.2.1
Solyc02g071730.2.1
Solyc02g091550.1.1
Solyc04g081000.2.1
Solyc05g056620.1.1
Solyc06g059970.2.1
Solyc10g017640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02310.1	Solyc05g056620.1.1	AT1G69120.1	15604664
AT3G02310.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT3G02310.1	Solyc04g081000.2.1	AT3G54340.1	15604664
AT3G02310.1	Solyc01g106170.2.1	AT3G57230.1	15805477
AT3G02310.1	Solyc02g071730.2.1	AT4G18960.1	15604664
AT3G02310.1	Solyc02g071730.2.1	AT4G18960.1	15805477
AT3G02310.1	Solyc02g071730.2.1	AT4G18960.1	9418042
AT3G02310.1	Solyc02g091550.1.1	AT4G37940.1	15805477
AT3G02310.1	Solyc06g059970.2.1	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003483	Potato	nucleus	99.19	99.19
VIT_14s0083g01050.t01	Wine grape	nucleus	71.14	72.02
KRG93698	Soybean	nucleus	70.33	69.48
KRH18339	Soybean	nucleus	70.33	69.48
KRH45097	Soybean	nucleus	70.33	68.92
KRH01380	Soybean	nucleus	69.92	67.45
Bra039170.1-P	Field mustard	nucleus	65.45	64.4
CDY57524	Canola	nucleus	65.45	64.4
CDY43239	Canola	nucleus	65.45	64.4
Bra008674.1-P	Field mustard	nucleus	65.85	64.29
AT3G02310.1	Thale cress	nucleus	64.63	63.6
Bra006322.1-P	Field mustard	nucleus	64.63	63.6
CDY26462	Canola	nucleus	65.45	63.39
Bra021470.1-P	Field mustard	nucleus	64.63	63.1
CDY34718	Canola	nucleus	64.23	62.7
Solyc05g015750.2.1	Tomato	nucleus	61.38	62.66
AT5G15800.2	Thale cress	nucleus	66.26	62.21
CDX69499	Canola	nucleus	66.26	61.74
GSMUA_Achr11P...	Banana	nucleus	58.94	61.7
CDX78653	Canola	nucleus	64.63	61.39
CDX70651	Canola	nucleus	64.63	61.39
Solyc04g005320.2.1	Tomato	nucleus	58.54	60.5
Solyc03g114840.2.1	Tomato	nucleus	60.16	60.16
HORVU5Hr1G076400.1	Barley	nucleus	61.38	59.92
TraesCS5A01G286800.1	Wheat	nucleus	61.38	59.92
TraesCS5D01G294500.1	Wheat	nucleus	61.38	59.92
TraesCS5B01G286100.2	Wheat	nucleus	60.98	59.52
Os09t0507200-01	Rice	nucleus	59.35	58.87
EER97012	Sorghum	nucleus	58.13	58.85
Solyc12g038510.1.1	Tomato	nucleus	58.94	58.0
TraesCS7B01G158600.1	Wheat	nucleus	57.72	57.72
TraesCS7A01G260600.1	Wheat	nucleus	57.72	57.26
TraesCS7D01G261600.1	Wheat	nucleus	57.72	57.26
Solyc05g012020.2.1	Tomato	nucleus	56.1	57.02
EES15309	Sorghum	nucleus	55.69	56.85
Zm00001d021057_P001	Maize	nucleus	56.91	56.68
Zm00001d006094_P001	Maize	nucleus	57.72	56.57
Os08t0531700-01	Rice	nucleus	56.1	55.42
Zm00001d031620_P001	Maize	nucleus	56.1	54.12
HORVU7Hr1G054220.3	Barley	nucleus	55.69	53.52
Solyc01g093960.2.1	Tomato	nucleus	47.15	46.03
Solyc03g114830.2.1	Tomato	nucleus	44.31	44.13
Solyc06g069430.2.1	Tomato	nucleus	42.28	42.45
Solyc02g089210.2.1	Tomato	nucleus	42.68	42.0
Solyc02g065730.1.1	Tomato	nucleus	38.21	40.17
Solyc03g019710.2.1	Tomato	nucleus	28.86	40.11
Solyc05g056620.1.1	Tomato	nucleus	39.43	39.75
Solyc11g028020.1.1	Tomato	nucleus	34.55	38.12
Solyc02g091550.1.1	Tomato	nucleus	32.52	34.04
Solyc07g055920.2.1	Tomato	nucleus	35.37	32.58
Solyc02g071730.2.1	Tomato	nucleus	32.52	32.26
Solyc01g106170.2.1	Tomato	mitochondrion	19.11	31.76
Solyc06g064840.2.1	Tomato	nucleus	20.33	24.88
Solyc04g076700.2.1	Tomato	nucleus	13.01	24.24
Solyc12g088090.1.1	Tomato	nucleus	18.29	20.27

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AJ302015	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF353	UniProt:Q8VXG0
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc02g089200.2	EnsemblPlants:Solyc02g089200.2.1	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000009EE5C	SEG:seg	:	:	:

Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:Q8VXG0]

Coordinates

chr2:+:51075019..51079656

Molecular Weight (calculated)

28483.0 Da

IEP (calculated)

8.287

GRAVY (calculated)

-0.717

Length

246 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALLVFSN RGKLYEFCST NNMLKTLDRY QKCSYGTLEV NRSIKDNEQS SYREYLKLKA
101: KYESLQRYQR HLLGDELGPL TIDDLEHLEV QLDTSLKHIR STRTQMMLDQ LSDLQTKEKL WNEANKVLER KMEEIYAENN MQQAWGGGEQ SLNYGQQQHP
201: QSQGFFQPLE CNSSLQIGYD PITTSSQITA VTNAQNVNGM IPGWML

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.