Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039313 | Potato | nucleus | 92.66 | 82.0 |
| VIT_17s0000g01230.t01 | Wine grape | nucleus | 64.97 | 48.94 |
| Solyc11g028020.1.1 | Tomato | nucleus | 44.07 | 34.98 |
| Solyc02g091550.1.1 | Tomato | nucleus | 41.81 | 31.49 |
| Solyc03g114830.2.1 | Tomato | nucleus | 43.5 | 31.17 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 25.99 | 31.08 |
| Solyc05g012020.2.1 | Tomato | nucleus | 41.81 | 30.58 |
| Solyc04g005320.2.1 | Tomato | nucleus | 40.68 | 30.25 |
| Solyc02g071730.2.1 | Tomato | nucleus | 42.37 | 30.24 |
| Solyc06g069430.2.1 | Tomato | nucleus | 41.81 | 30.2 |
| Solyc05g015750.2.1 | Tomato | nucleus | 40.11 | 29.46 |
| Solyc03g114840.2.1 | Tomato | nucleus | 40.68 | 29.27 |
| Solyc12g038510.1.1 | Tomato | nucleus | 41.24 | 29.2 |
| Solyc05g056620.1.1 | Tomato | nucleus | 40.11 | 29.1 |
| Solyc02g089200.2.1 | Tomato | nucleus | 40.11 | 28.86 |
| Solyc02g065730.1.1 | Tomato | nucleus | 37.85 | 28.63 |
| Solyc01g093960.2.1 | Tomato | nucleus | 40.68 | 28.57 |
| Solyc02g089210.2.1 | Tomato | nucleus | 40.11 | 28.4 |
| Solyc07g055920.2.1 | Tomato | nucleus | 39.55 | 26.22 |
| Solyc06g064840.2.1 | Tomato | nucleus | 25.99 | 22.89 |
| CDY65347 | Canola | nucleus | 20.34 | 22.78 |
| Solyc04g076700.2.1 | Tomato | nucleus | 10.73 | 14.39 |
| Solyc12g088090.1.1 | Tomato | nucleus | 16.95 | 13.51 |
| CDY65346 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | UniProt:K4BEU3 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF361 | SMART:SM00432 |
| SUPFAM:SSF55455 | EnsemblPlantsGene:Solyc03g019710.2 | EnsemblPlants:Solyc03g019710.2.1 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0002768716 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:61436784..61440333
Molecular Weight (calculated)
20705.2 Da
IEP (calculated)
10.436
GRAVY (calculated)
-0.751
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENQTNRQVT FSKRRNGLLK KAYELSILCD AEVALLLFSP SGKAYHFASH DIERTILRYK NEVGLSKNSD QGPRAMEVWR TKIDDMTRTI
101: HELEARDKHF AGEELSNLGM KELKQLERQL RVGVERIRSK KHKILHEENI HLQKQVKLYE VEGSSRILDT NPRMRII
101: HELEARDKHF AGEELSNLGM KELKQLERQL RVGVERIRSK KHKILHEENI HLQKQVKLYE VEGSSRILDT NPRMRII
001: MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPTITEA
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK RVKEIELQND NMYLRSKITE RTGLQQQESS
201: VIHQGTVYES GVTSSHQSGQ YNRNYIAVNL LEPNQNSSNQ DQPPLQLV
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK RVKEIELQND NMYLRSKITE RTGLQQQESS
201: VIHQGTVYES GVTSSHQSGQ YNRNYIAVNL LEPNQNSSNQ DQPPLQLV
Arabidopsis Description
SHP2K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT2G42830]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.