Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005159 | Potato | nucleus | 76.58 | 80.19 |
| Solyc04g076700.2.1 | Tomato | nucleus | 41.44 | 69.7 |
| VIT_18s0001g07900.t01 | Wine grape | nucleus | 54.95 | 50.83 |
| KRH16883 | Soybean | nucleus | 54.05 | 50.21 |
| Solyc02g091550.1.1 | Tomato | nucleus | 47.3 | 44.68 |
| KRH72490 | Soybean | nucleus | 48.65 | 44.44 |
| Solyc06g064840.2.1 | Tomato | nucleus | 20.72 | 22.89 |
| Solyc11g028020.1.1 | Tomato | nucleus | 21.17 | 21.08 |
| Solyc02g071730.2.1 | Tomato | nucleus | 22.97 | 20.56 |
| Solyc02g065730.1.1 | Tomato | nucleus | 21.17 | 20.09 |
| Solyc05g056620.1.1 | Tomato | nucleus | 22.07 | 20.08 |
| Solyc06g069430.2.1 | Tomato | nucleus | 22.07 | 20.0 |
| Solyc01g093960.2.1 | Tomato | nucleus | 22.52 | 19.84 |
| Solyc03g114830.2.1 | Tomato | nucleus | 21.62 | 19.43 |
| Solyc02g089210.2.1 | Tomato | nucleus | 21.62 | 19.2 |
| Solyc12g038510.1.1 | Tomato | nucleus | 21.17 | 18.8 |
| Solyc07g055920.2.1 | Tomato | nucleus | 22.07 | 18.35 |
| Solyc02g089200.2.1 | Tomato | nucleus | 20.27 | 18.29 |
| Solyc05g015750.2.1 | Tomato | nucleus | 19.82 | 18.26 |
| Solyc05g012020.2.1 | Tomato | nucleus | 19.82 | 18.18 |
| Solyc04g005320.2.1 | Tomato | nucleus | 19.37 | 18.07 |
| Solyc03g114840.2.1 | Tomato | nucleus | 19.37 | 17.48 |
| Solyc03g019710.2.1 | Tomato | nucleus | 13.51 | 16.95 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 9.91 | 14.86 |
Protein Annotations
| MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002487 | UniProt:K4DGN0 | PFAM:PF01486 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | EnsemblPlantsGene:Solyc12g088090.1 | EnsemblPlants:Solyc12g088090.1.1 | InterPro:TF_Kbox | UniParc:UPI000276A9BB |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:63573379..63578437
Molecular Weight (calculated)
25579.9 Da
IEP (calculated)
10.120
GRAVY (calculated)
-0.755
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MSADDTGSHT CFLVRVSPST MVQRLSCHLA LEKGARLTIN IGSLMKSVIE RYNKAKEDNT YKLGDPSSEV KFWQREAALL RQQLENLQRN HRKMMGEELS
101: GLNVKDLQNL EKQLETSLRG VRAKKDQILI NEVQELNRKR NFSHQENKEL HKKLDIVRRE NMELYKKVYG NRDSNVVSKM ATSSSSLSVK EDPLAPLHLQ
201: LSQPQLQHYE MPGTTKLRLS LH
101: GLNVKDLQNL EKQLETSLRG VRAKKDQILI NEVQELNRKR NFSHQENKEL HKKLDIVRRE NMELYKKVYG NRDSNVVSKM ATSSSSLSVK EDPLAPLHLQ
201: LSQPQLQHYE MPGTTKLRLS LH
001: MLQWMLLGLH YLSTTLYNYE TTLFFGSMKS VIERYSDAKG ETSSENDPAS EIQFWQKEAA ILKRQLHNLQ ENHRQMMGEE LSGLSVEALQ NLENQLELSL
101: RGVRMKKDQM LIEEIQVLNR EGNLVHQENL DLHKKVNLMH QQNMELHEKV SEVEGVKIAN KNSLLTNGLD MRDTSNEHVH LQLSQPQHDH ETHSKAIQLN
201: YFSFIA
101: RGVRMKKDQM LIEEIQVLNR EGNLVHQENL DLHKKVNLMH QQNMELHEKV SEVEGVKIAN KNSLLTNGLD MRDTSNEHVH LQLSQPQHDH ETHSKAIQLN
201: YFSFIA
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [extracellular,nucleus]
SUBAcon: [extracellular,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.