Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g088090.1.1 | Tomato | nucleus | 80.19 | 76.58 |
| PGSC0003DMT400024193 | Potato | nucleus | 56.13 | 66.48 |
| VIT_18s0001g07900.t01 | Wine grape | nucleus | 57.55 | 50.83 |
| KRH16883 | Soybean | nucleus | 56.6 | 50.21 |
| KRH72490 | Soybean | nucleus | 50.47 | 44.03 |
| PGSC0003DMT400013248 | Potato | nucleus | 21.7 | 19.83 |
| PGSC0003DMT400073134 | Potato | nucleus | 23.11 | 19.76 |
| PGSC0003DMT400065614 | Potato | nucleus | 21.23 | 19.4 |
| PGSC0003DMT400072888 | Potato | nucleus | 21.7 | 18.85 |
| PGSC0003DMT400000383 | Potato | nucleus | 22.64 | 18.82 |
| PGSC0003DMT400068325 | Potato | nucleus | 20.75 | 18.8 |
| PGSC0003DMT400010451 | Potato | nucleus | 22.17 | 18.8 |
| PGSC0003DMT400063313 | Potato | nucleus | 21.7 | 18.55 |
| PGSC0003DMT400056363 | Potato | nucleus | 20.75 | 18.26 |
| PGSC0003DMT400003485 | Potato | nucleus | 20.75 | 17.81 |
| PGSC0003DMT400063315 | Potato | nucleus | 20.28 | 17.48 |
| PGSC0003DMT400044552 | Potato | nucleus | 20.75 | 17.32 |
| PGSC0003DMT400039313 | Potato | nucleus | 16.04 | 17.0 |
| PGSC0003DMT400003483 | Potato | nucleus | 18.87 | 16.26 |
| PGSC0003DMT400072891 | Potato | nucleus | 17.45 | 15.29 |
| PGSC0003DMT400004875 | Potato | nucleus | 11.79 | 13.3 |
Protein Annotations
| MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002487 | UniProt:M0ZPK0 | PFAM:PF01486 | EnsemblPlantsGene:PGSC0003DMG400002039 |
| PGSC:PGSC0003DMG400002039 | EnsemblPlants:PGSC0003DMT400005159 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | InterPro:TF_Kbox |
| UniParc:UPI000296D123 | SEG:seg | : | : | : | : |
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002039]
Coordinates
chr12:+:55904011..55910065
Molecular Weight (calculated)
24507.2 Da
IEP (calculated)
8.670
GRAVY (calculated)
-0.926
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDDDTELHT CSAVCVSPST TVQSLSPISP RERFKAGNDH SMKSVIERYN KAKEDNTNKL GDPSSEVKFW QREAALLRKQ LENLQRNHRK MMGEELSGLN
101: VKELQNLEKQ LEMSLRGVRV KKDQILVEER NFSHQENKEL YKKLDLVRQE NMELYKKVYG TRDANVLSRN AMSSNSLSVN EDPLTPLHLQ LSQPQQQHYE
201: MPGTTKLRLS LH
101: VKELQNLEKQ LEMSLRGVRV KKDQILVEER NFSHQENKEL YKKLDLVRQE NMELYKKVYG TRDANVLSRN AMSSNSLSVN EDPLTPLHLQ LSQPQQQHYE
201: MPGTTKLRLS LH
001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.