Factsheet for PGSC0003DMT400072888

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000028
PGSC0003DMT400000383
PGSC0003DMT400003073
PGSC0003DMT400003483
PGSC0003DMT400024247
PGSC0003DMT400026576
PGSC0003DMT400041675
PGSC0003DMT400043273
PGSC0003DMT400072888
PGSC0003DMT400072891
PGSC0003DMT400089615
PGSC0003DMT400092079

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26310.1	PGSC0003DMT400000028	AT2G45660.1	11439126
AT1G26310.1	PGSC0003DMT400026576	AT2G45660.1	11439126
AT1G26310.1	PGSC0003DMT400000028	AT2G45660.1	15805477
AT1G26310.1	PGSC0003DMT400026576	AT2G45660.1	15805477
AT1G26310.1	PGSC0003DMT400024247	AT4G24540.1	11439126
AT1G69120.1	PGSC0003DMT400003073	AT1G31630.1	15805477
AT1G69120.1	PGSC0003DMT400089615	AT1G31630.1	15805477
AT1G69120.1	PGSC0003DMT400003073	AT1G31640.1	15805477
AT1G69120.1	PGSC0003DMT400089615	AT1G31640.1	15805477
AT1G69120.1	PGSC0003DMT400092079	AT1G43850.1	16854969
AT1G69120.1	PGSC0003DMT400072888	AT1G69120.1	15604664
AT1G69120.1	PGSC0003DMT400072891	AT2G03710.1	15805477
AT1G69120.1	PGSC0003DMT400000383	AT2G45650.1	15805477
AT1G69120.1	PGSC0003DMT400000028	AT2G45660.1	11439126
AT1G69120.1	PGSC0003DMT400026576	AT2G45660.1	11439126
AT1G69120.1	PGSC0003DMT400000028	AT2G45660.1	15805477
AT1G69120.1	PGSC0003DMT400026576	AT2G45660.1	15805477
AT1G69120.1	PGSC0003DMT400003483	AT3G02310.1	15604664
AT1G69120.1	PGSC0003DMT400024247	AT4G24540.1	11439126
AT1G69120.1	PGSC0003DMT400024247	AT4G24540.1	15805477
AT1G69120.1	PGSC0003DMT400041675	AT5G65260.1	11439126
AT1G69120.1	PGSC0003DMT400043273	AT5G65260.1	11439126

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056620.1.1	Tomato	nucleus	99.18	99.18
KRH75125	Soybean	nucleus	21.31	85.25
KRH07467	Soybean	nucleus	68.85	71.19
VIT_01s0011g00100.t01	Wine grape	nucleus	69.67	70.54
KRH45412	Soybean	nucleus	67.62	69.92
Bra004361.1-P	Field mustard	nucleus	52.46	67.72
KRH70974	Soybean	nucleus	65.98	66.26
CDY36077	Canola	nucleus	56.56	62.44
CDY65811	Canola	nucleus	64.75	61.72
Bra038326.1-P	Field mustard	nucleus	64.75	61.72
CDY34564	Canola	nucleus	54.92	61.47
AT1G69120.1	Thale cress	nucleus	64.34	61.33
CDY33554	Canola	nucleus	63.52	60.55
CDX95960	Canola	nucleus	62.7	59.77
Bra011021.1-P	Field mustard	nucleus	61.89	59.45
AT1G26310.1	Thale cress	nucleus	61.89	59.22
PGSC0003DMT400063313	Potato	nucleus	59.43	58.47
PGSC0003DMT400010451	Potato	nucleus	58.2	56.8
PGSC0003DMT400003485	Potato	nucleus	57.38	56.68
Bra004007.1-P	Field mustard	nucleus	62.3	56.09
CDY04265	Canola	nucleus	63.52	55.96
EER90862	Sorghum	nucleus	54.51	54.29
PGSC0003DMT400068325	Potato	nucleus	52.05	54.27
TraesCS5A01G391700.1	Wheat	nucleus	54.1	54.1
CDY07357	Canola	nucleus	63.93	53.98
TraesCS2D01G262700.1	Wheat	nucleus	58.2	52.4
Zm00001d018667_P003	Maize	nucleus	58.2	52.4
EER95753	Sorghum	nucleus	57.79	52.22
TraesCS5B01G396600.2	Wheat	nucleus	53.69	52.19
Os07t0108900-02	Rice	nucleus	56.97	52.06
TraesCS2A01G261200.2	Wheat	nucleus	58.2	51.82
TraesCS2B01G281000.1	Wheat	nucleus	58.2	51.82
GSMUA_Achr2P13650_001	Banana	nucleus	52.05	51.63
GSMUA_Achr4P23540_001	Banana	nucleus	52.46	51.61
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	53.69	51.57
GSMUA_Achr6P00050_001	Banana	nucleus	50.82	51.24
Os03t0752800-02	Rice	nucleus	51.64	51.22
EER97510	Sorghum	nucleus	52.87	50.99
Zm00001d022088_P004	Maize	nucleus	52.46	49.61
GSMUA_Achr7P00460_001	Banana	nucleus	50.82	49.6
GSMUA_Achr8P04330_001	Banana	nucleus	49.18	48.98
Os07t0605200-01	Rice	nucleus	49.59	48.59
Zm00001d013259_P002	Maize	nucleus	54.51	47.67
TraesCS2D01G181400.3	Wheat	nucleus	51.64	47.19
TraesCS2B01G200800.1	Wheat	nucleus	51.64	47.19
TraesCS2A01G174300.3	Wheat	nucleus	51.64	47.19
Zm00001d007949_P001	Maize	nucleus	58.2	46.56
HORVU2Hr1G063800.7	Barley	nucleus, plastid	57.79	46.08
GSMUA_Achr10P...	Banana	nucleus	53.28	45.61
Zm00001d034045_P003	Maize	nucleus	53.28	44.67
GSMUA_Achr3P30440_001	Banana	nucleus	41.8	44.35
GSMUA_Achr3P02280_001	Banana	nucleus	47.54	44.11
GSMUA_Achr3P25280_001	Banana	nucleus	46.72	42.86
HORVU5Hr1G095630.3	Barley	nucleus, plastid	52.87	42.02
PGSC0003DMT400072891	Potato	nucleus	40.98	41.32
PGSC0003DMT400063315	Potato	nucleus	40.98	40.65
PGSC0003DMT400056363	Potato	nucleus	39.34	39.83
PGSC0003DMT400003483	Potato	nucleus	39.75	39.43
PGSC0003DMT400004875	Potato	nucleus	28.69	37.23
PGSC0003DMT400039313	Potato	nucleus	30.33	37.0
PGSC0003DMT400000383	Potato	nucleus	38.52	36.86
KXG23502	Sorghum	nucleus	33.61	36.77
Os12t0501700-00	Rice	nucleus	34.84	36.48
Zm00001d023736_P001	Maize	nucleus	35.66	33.85
PGSC0003DMT400065614	Potato	nucleus	30.74	32.33
PGSC0003DMT400073134	Potato	nucleus	32.79	32.26
PGSC0003DMT400013248	Potato	nucleus	29.51	31.03
PGSC0003DMT400044552	Potato	nucleus	30.74	29.53
PGSC0003DMT400024193	Potato	nucleus	20.08	27.37
PGSC0003DMT400005159	Potato	nucleus	18.85	21.7

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:ADA77531	ProteinID:ADA77531.1	ncoils:Coil	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	EMBL:GU220568	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M1CR50
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400028358	PGSC:PGSC0003DMG400028358	EnsemblPlants:PGSC0003DMT400072888
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF244
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00029680A6
SEG:seg	:	:	:	:	:

Description

MADS-box transcription factor MADS-MC [Source:PGSC_GENE;Acc:PGSC0003DMG400028358]

Coordinates

chr5:+:766418..772401

Molecular Weight (calculated)

28618.2 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.848

Length

244 amino acids

Sequence
(BLAST)

001: MGRGKVELRK IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVALIVFSQ KGKIFEYSSD SCMEQILERY ERYSYAERRL LANNSESPVQ ENWSLEYTKL
101: KARIDLLQRN HKHYMGEDLD SMSLKDLQNL EQQLDSALKL IRSRKNQLMH ESISELQKKE RAILEENNML TKKIKEKDKI VEQQGEWHQQ TNQVSTSTSF
201: LLQPHQCLNM GGNYQDEAAE ARRNNELDLN LDSLYPLFNM NKHL

Best Arabidopsis Sequence Match ( AT1G69120.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA

Arabidopsis Description

AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.