Factsheet for VIT_01s0011g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g07460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26310.1	VIT_18s0001g07460.t01	AT4G24540.1	11439126

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072888	Potato	nucleus	70.54	69.67
Solyc05g056620.1.1	Tomato	nucleus	70.54	69.67
CDY36077	Canola	nucleus	61.0	66.52
CDY34564	Canola	nucleus	60.17	66.51
VIT_14s0068g01800.t01	Wine grape	nucleus	17.43	65.62
AT1G26310.1	Thale cress	nucleus	69.29	65.49
Bra011021.1-P	Field mustard	nucleus	68.88	65.35
VIT_17s0000g04990.t01	Wine grape	nucleus	65.15	64.61
VIT_14s0083g01030.t01	Wine grape	nucleus	65.56	63.97
EER90862	Sorghum	nucleus	61.41	60.41
GSMUA_Achr6P00050_001	Banana	nucleus	60.58	60.33
GSMUA_Achr2P13650_001	Banana	nucleus	61.41	60.16
GSMUA_Achr4P23540_001	Banana	nucleus	61.83	60.08
TraesCS5A01G391700.1	Wheat	nucleus	59.34	58.61
GSMUA_Achr7P00460_001	Banana	nucleus	60.58	58.4
Os03t0752800-02	Rice	nucleus	58.92	57.72
TraesCS5B01G396600.2	Wheat	nucleus	58.51	56.18
GSMUA_Achr8P04330_001	Banana	nucleus	56.85	55.92
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	58.92	55.91
TraesCS2D01G262700.1	Wheat	nucleus	61.83	54.98
EER97510	Sorghum	nucleus	57.68	54.94
GSMUA_Achr10P...	Banana	nucleus	64.73	54.74
EER95753	Sorghum	nucleus	61.0	54.44
TraesCS2A01G261200.2	Wheat	nucleus	61.83	54.38
TraesCS2B01G281000.1	Wheat	nucleus	61.83	54.38
Zm00001d018667_P003	Maize	nucleus	61.0	54.24
Os07t0108900-02	Rice	nucleus	59.75	53.93
Zm00001d013259_P002	Maize	nucleus	61.83	53.41
Zm00001d022088_P004	Maize	nucleus	56.43	52.71
GSMUA_Achr3P30440_001	Banana	nucleus	49.79	52.17
GSMUA_Achr3P02280_001	Banana	nucleus	56.85	52.09
Os07t0605200-01	Rice	nucleus	53.53	51.81
TraesCS2B01G200800.1	Wheat	nucleus	56.02	50.56
TraesCS2D01G181400.3	Wheat	nucleus	56.02	50.56
TraesCS2A01G174300.3	Wheat	nucleus	55.19	49.81
GSMUA_Achr3P25280_001	Banana	nucleus	54.77	49.62
Zm00001d034045_P003	Maize	nucleus	59.34	49.14
Zm00001d007949_P001	Maize	nucleus	61.41	48.52
VIT_01s0010g03900.t01	Wine grape	nucleus	44.4	48.42
HORVU2Hr1G063800.7	Barley	nucleus, plastid	61.0	48.04
VIT_14s0083g01050.t01	Wine grape	nucleus	46.47	46.09
VIT_01s0011g00110.t01	Wine grape	nucleus	46.06	45.68
HORVU5Hr1G095630.3	Barley	nucleus, plastid	58.09	45.6
VIT_15s0048g01270.t01	Wine grape	nucleus	46.06	45.49
VIT_17s0000g05000.t01	Wine grape	nucleus	45.64	44.72
VIT_16s0022g02330.t01	Wine grape	nucleus	46.06	44.58
VIT_10s0003g02070.t01	Wine grape	nucleus	37.34	39.82
Os12t0501700-00	Rice	nucleus	37.76	39.06
KXG23502	Sorghum	nucleus	36.1	39.01
VIT_18s0041g01880.t01	Wine grape	nucleus	36.1	39.01
Zm00001d023736_P001	Maize	nucleus	38.17	35.8
VIT_00s0211g00180.t01	Wine grape	nucleus	31.95	34.38
VIT_12s0142g00360.t01	Wine grape	nucleus	37.76	33.21
VIT_17s0000g01230.t01	Wine grape	nucleus	32.37	33.19
VIT_18s0001g07900.t01	Wine grape	nucleus	32.78	32.92

Protein Annotations

EntrezGene:100232952	wikigene:100232952	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AAT07447	ProteinID:AAT07447.1
ProteinID:ACZ26528	ProteinID:ACZ26528.1	EMBL:AM437374	EntrezGene:AP1	wikigene:AP1	EMBL:AY538746
ProteinID:CAN71708	ProteinID:CAN71708.1	ProteinID:CBI27320	ProteinID:CBI27320.3	ncoils:Coil	EMBL:FN595752
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010582	GO:GO:0045944
GO:GO:0046983	EMBL:GU133634	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF244	UniProt:Q6E6S7	SMART:SM00432	SUPFAM:SSF55455	TIGR:TC58241
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00003E21C8	ArrayExpress:VIT_01s0011g00100	EnsemblPlantsGene:VIT_01s0011g00100
EnsemblPlants:VIT_01s0011g00100.t01	unigene:Vvi.18144	:	:	:	:

Description

AP1-like protein [Source:UniProtKB/TrEMBL;Acc:Q6E6S7]

Coordinates

chr1:-:150391..175330

Molecular Weight (calculated)

27993.5 Da

IEP (calculated)

8.844

GRAVY (calculated)

-0.790

Length

241 amino acids

Sequence
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD SCMEKILDRY ERYSYAERQL TATDPESQGN WSLEYSKLKA
101: KIELLQRSQR HFLGEDLDSL SLKELQNLEQ QLDTALKHIR SRKNQLMYES ISELQRKEKA MQEQNNMLAK EIKEKEKTVA QQTHWEQQNH GLNTSSFLLP
201: QQLPCLNMGG TYQGEAHGAR RNELDLTLEP IYPSHLGCFT T

Best Arabidopsis Sequence Match ( AT1G69120.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA

Arabidopsis Description

AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.