Factsheet for VIT_12s0142g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g02070.t01	Wine grape	nucleus	65.33	79.2
KRH14461	Soybean	nucleus	28.1	74.04
KRH73684	Soybean	nucleus	64.96	72.36
KRH46066	Soybean	nucleus	63.5	70.45
KRG98899	Soybean	nucleus	63.14	70.33
GSMUA_Achr10P...	Banana	nucleus	57.3	68.56
PGSC0003DMT400044552	Potato	nucleus	62.04	66.93
Bra004716.1-P	Field mustard	nucleus	59.49	66.8
CDX79857	Canola	nucleus	59.49	66.8
Solyc07g055920.2.1	Tomato	nucleus	64.6	66.29
AT2G42830.2	Thale cress	nucleus	59.85	66.13
GSMUA_Achr5P06590_001	Banana	nucleus	41.97	65.71
CDX98330	Canola	nucleus	59.12	65.32
Bra014552.1-P	Field mustard	nucleus	58.39	64.52
Bra007419.1-P	Field mustard	nucleus	57.66	64.49
VIT_18s0041g01880.t01	Wine grape	nucleus	51.82	63.68
VIT_14s0068g01800.t01	Wine grape	nucleus	14.6	62.5
GSMUA_Achr6P14760_001	Banana	nucleus	57.3	61.81
AT3G58780.4	Thale cress	nucleus	60.95	59.43
CDY49254	Canola	nucleus	58.03	57.82
CDX89005	Canola	nucleus	58.03	57.61
CDY00589	Canola	nucleus	57.66	57.45
EES00105	Sorghum	nucleus	54.74	55.76
HORVU3Hr1G026650.1	Barley	nucleus	54.38	54.98
Zm00001d039434_P001	Maize	nucleus	52.55	54.96
Os01t0201700-02	Rice	nucleus	55.11	54.71
Bra003356.1-P	Field mustard	nucleus	54.38	54.58
TraesCS3A01G314300.1	Wheat	nucleus	54.38	54.58
TraesCS3D01G140200.2	Wheat	nucleus	54.38	54.38
Os01t0886200-01	Rice	nucleus	51.82	53.58
HORVU1Hr1G023620.1	Barley	nucleus	49.27	53.57
TraesCS5B01G115100.1	Wheat	nucleus	48.91	53.17
TraesCS1D01G262700.1	Wheat	nucleus	48.18	52.8
TraesCS5D01G118200.1	Wheat	nucleus	48.54	52.78
TraesCS5A01G117500.1	Wheat	nucleus	48.18	51.97
Zm00001d042591_P002	Maize	nucleus	50.37	51.49
Os12t0207000-01	Rice	nucleus	50.73	51.48
TraesCS1B01G273300.1	Wheat	nucleus	47.81	51.37
Zm00001d023955_P003	Maize	nucleus	49.63	51.32
TraesCS1B01G144800.1	Wheat	nucleus	50.37	51.3
TraesCS1D01G127700.1	Wheat	nucleus	50.0	50.93
EES15827	Sorghum	nucleus	50.0	50.93
TraesCS1A01G125800.1	Wheat	nucleus	49.63	50.56
EES01878	Sorghum	nucleus	51.09	50.54
Os05t0203800-02	Rice	nucleus	50.0	50.37
GSMUA_Achr10P...	Banana	nucleus	58.39	50.16
Zm00001d041781_P001	Maize	nucleus	50.37	48.08
TraesCS3B01G157500.4	Wheat	nucleus	54.38	48.06
TraesCS1A01G262700.1	Wheat	endoplasmic reticulum	47.81	47.64
CDX67765	Canola	nucleus	59.12	46.55
OQU77603	Sorghum	nucleus	48.54	45.55
Zm00001d037737_P001	Maize	nucleus	48.54	43.46
HORVU1Hr1G029220.1	Barley	nucleus	49.63	41.72
VIT_01s0010g03900.t01	Wine grape	nucleus	33.21	41.18
Zm00001d008882_P001	Maize	nucleus	49.27	41.03
VIT_15s0048g01270.t01	Wine grape	nucleus	36.13	40.57
VIT_14s0083g01050.t01	Wine grape	nucleus	34.67	39.09
VIT_17s0000g05000.t01	Wine grape	nucleus	33.94	37.8
VIT_01s0011g00100.t01	Wine grape	nucleus	33.21	37.76
VIT_01s0011g00110.t01	Wine grape	nucleus	32.85	37.04
VIT_17s0000g01230.t01	Wine grape	nucleus	31.39	36.6
VIT_18s0001g07900.t01	Wine grape	nucleus	31.75	36.25
VIT_00s0211g00180.t01	Wine grape	nucleus	29.56	36.16
VIT_17s0000g04990.t01	Wine grape	nucleus	31.75	35.8
VIT_16s0022g02330.t01	Wine grape	nucleus	32.48	35.74
VIT_14s0083g01030.t01	Wine grape	nucleus	31.39	34.82

Protein Annotations

EntrezGene:100232864	wikigene:100232864	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AAK58564	ProteinID:AAK58564.1
ProteinID:AAP20095	ProteinID:AAP20095.1	EMBL:AF265562	EMBL:AY256861	ProteinID:CCB56406	ProteinID:CCB56406.1
ncoils:Coil	UniProt:F6HP00	EMBL:FN595999	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EntrezGene:MADS1	wikigene:MADS1
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF150	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	TMHMM:TMhelix	UniParc:UPI0002107FF7	ArrayExpress:VIT_12s0142g00360	EnsemblPlantsGene:VIT_12s0142g00360
EnsemblPlants:VIT_12s0142g00360.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:279426..291956

Molecular Weight (calculated)

31786.4 Da

IEP (calculated)

9.877

GRAVY (calculated)

-0.441

Length

274 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN SVRTTIERYK KVCSDSSNTG SVSEANAQFY QQEASKLRRQ
101: IRDIQNLNRH ILGEALSSLN FKELKNLETR LEKGISRIRS KKNELLFAEI EYMQKREIEL QNSNLFLRAQ IAENERAQQQ MNLMPGSQYE SVPQQPYDSQ
201: NLLPVNLLDP NHHYSRHDQT ALQLVTICLL YLYLKTYFSS ILKINKLMKY HFIVALSYNG LVRSGAVFVG LFVE

Best Arabidopsis Sequence Match ( AT3G58780.5 )
(BLAST)

001: MSYIGSMEEG GSSHDAESSK KLGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC DAEVALVIFS TRGRLYEYAN NSVRGTIERY KKACSDAVNP
101: PSVTEANTQY YQQEASKLRR QIRDIQNSNR HIVGESLGSL NFKELKNLEG RLEKGISRVR SKKNELLVAE IEYMQKREME LQHNNMYLRA KIAEGARLNP
201: DQQESSVIQG TTVYESGVSS HDQSQHYNRN YIPVNLLEPN QQFSGQDQPP LQLV

Arabidopsis Description

SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.