Factsheet for GSMUA_Achr10P21480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P00750_001
GSMUA_Achr2P10250_001
GSMUA_Achr2P13650_001
GSMUA_Achr3P02280_001
GSMUA_Achr3P06800_001
GSMUA_Achr3P07310_001
GSMUA_Achr3P25280_001
GSMUA_Achr3P30440_001
GSMUA_Achr4P23540_001
GSMUA_Achr4P30120_001
GSMUA_Achr5P06590_001
GSMUA_Achr5P24560_001
GSMUA_Achr6P00050_001
GSMUA_Achr6P14760_001
GSMUA_Achr7P00460_001
GSMUA_Achr7P12610_001
GSMUA_Achr8P04330_001
GSMUA_Achr9P01370_001
GSMUA_Achr9P15180_001
GSMUA_Achr9P15540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	GSMUA_Achr9P01370_001	AT1G24260.2	9418042
AT4G18960.1	GSMUA_Achr1P00750_001	AT2G45650.1	9418042
AT4G18960.1	GSMUA_Achr2P10250_001	AT2G45650.1	9418042
AT4G18960.1	GSMUA_Achr4P30120_001	AT2G45650.1	9418042
AT4G18960.1	GSMUA_Achr11P...	AT3G02310.1	15604664
AT4G18960.1	GSMUA_Achr11P...	AT3G02310.1	15805477
AT4G18960.1	GSMUA_Achr11P...	AT3G02310.1	9418042
AT4G18960.1	GSMUA_Achr3P07310_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr5P24560_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr7P12610_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr9P15540_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr1P00750_001	AT3G61120.1	15805477
AT4G18960.1	GSMUA_Achr2P10250_001	AT3G61120.1	15805477
AT4G18960.1	GSMUA_Achr4P30120_001	AT3G61120.1	15805477
AT4G18960.1	GSMUA_Achr10P...	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr10P...	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr5P06590_001	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr6P14760_001	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr10P...	AT4G24540.1	15805477
AT4G18960.1	GSMUA_Achr3P06800_001	AT4G24540.1	15805477
AT4G18960.1	GSMUA_Achr9P15180_001	AT4G24540.1	15805477
AT4G18960.1	GSMUA_Achr10P...	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr2P13650_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr3P02280_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr3P25280_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr3P30440_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr4P23540_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr6P00050_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr7P00460_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr8P04330_001	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	58.31	81.22
GSMUA_Achr5P06590_001	Banana	nucleus	42.01	76.57
VIT_10s0003g02070.t01	Wine grape	nucleus	50.78	71.68
KRH14461	Soybean	nucleus	23.2	71.15
GSMUA_Achr6P14760_001	Banana	nucleus	55.8	70.08
KRH21150	Soybean	nucleus	49.84	65.43
PGSC0003DMT400073134	Potato	nucleus	50.78	65.32
Solyc02g071730.2.1	Tomato	nucleus	50.16	64.52
GSMUA_Achr7P23690_001	Banana	nucleus	47.34	63.18
GSMUA_Achr10P...	Banana	nucleus	46.08	62.82
CDY09267	Canola	nucleus	48.9	62.65
KRH42930	Soybean	nucleus	47.65	62.55
Bra013364.1-P	Field mustard	nucleus	49.22	62.3
CDX78909	Canola	nucleus	49.22	62.3
EES00105	Sorghum	nucleus	52.35	62.08
HORVU3Hr1G026650.1	Barley	nucleus	52.66	61.99
KRH46066	Soybean	nucleus	47.96	61.94
AT4G18960.1	Thale cress	nucleus	48.9	61.9
KRG98899	Soybean	nucleus	47.65	61.79
Os01t0201700-02	Rice	nucleus	53.29	61.59
TraesCS3A01G314300.1	Wheat	nucleus	52.66	61.54
KRH59043	Soybean	nucleus	46.71	61.32
TraesCS3D01G140200.2	Wheat	nucleus	52.66	61.31
Zm00001d039434_P001	Maize	nucleus	50.16	61.07
Bra012564.1-P	Field mustard	nucleus	47.96	60.96
CDX98597	Canola	nucleus	47.96	60.96
KRH73684	Soybean	nucleus	46.4	60.16
Solyc07g055920.2.1	Tomato	nucleus	50.16	59.93
PGSC0003DMT400044552	Potato	nucleus	46.71	58.66
VIT_12s0142g00360.t01	Wine grape	nucleus	50.16	58.39
CDX79857	Canola	nucleus	44.2	57.79
Bra004716.1-P	Field mustard	nucleus	44.2	57.79
CDX98330	Canola	nucleus	44.83	57.66
AT2G42830.2	Thale cress	nucleus	44.51	57.26
TraesCS5B01G115100.1	Wheat	nucleus	45.14	57.14
TraesCS5D01G118200.1	Wheat	nucleus	45.14	57.14
TraesCS1B01G144800.1	Wheat	nucleus	47.65	56.51
Bra014552.1-P	Field mustard	nucleus	43.89	56.45
Bra007419.1-P	Field mustard	nucleus	43.26	56.33
TraesCS1D01G127700.1	Wheat	nucleus	47.34	56.13
TraesCS5A01G117500.1	Wheat	nucleus	44.51	55.91
TraesCS1A01G125800.1	Wheat	nucleus	47.02	55.76
HORVU1Hr1G023620.1	Barley	nucleus	43.89	55.56
TraesCS3B01G157500.4	Wheat	nucleus	53.29	54.84
Os05t0203800-02	Rice	nucleus	46.71	54.78
GSMUA_Achr5P16870_001	Banana	nucleus, plastid	48.59	54.58
Os12t0207000-01	Rice	nucleus	44.83	52.96
Zm00001d023955_P003	Maize	nucleus	43.57	52.45
GSMUA_Achr10P...	Banana	nucleus	19.12	51.69
CDX99406	Canola	nucleus	50.47	51.6
EES15827	Sorghum	nucleus	43.26	51.3
CDY49254	Canola	nucleus	43.89	50.91
AT3G58780.4	Thale cress	nucleus	44.83	50.89
CDY00589	Canola	nucleus	43.57	50.55
CDX89005	Canola	nucleus	43.57	50.36
Zm00001d041781_P001	Maize	nucleus	44.51	49.48
OQU77603	Sorghum	nucleus	44.83	48.97
HORVU1Hr1G029220.1	Barley	nucleus	49.22	48.16
Bra003356.1-P	Field mustard	nucleus	40.13	46.89
Zm00001d037737_P001	Maize	nucleus	44.83	46.73
Zm00001d008882_P001	Maize	nucleus	47.02	45.59
CDX67765	Canola	nucleus	44.83	41.09
GSMUA_Achr2P04350_001	Banana	nucleus	29.47	39.17
GSMUA_Achr4P30120_001	Banana	nucleus	28.84	39.15
GSMUA_Achr3P07310_001	Banana	nucleus	29.47	38.52
GSMUA_Achr2P10250_001	Banana	nucleus	28.84	38.02
GSMUA_Achr1P00750_001	Banana	nucleus	28.84	38.02
GSMUA_Achr4P14460_001	Banana	nucleus	28.21	37.5
GSMUA_Achr9P01370_001	Banana	nucleus	28.53	37.45
GSMUA_Achr7P12610_001	Banana	nucleus	27.59	37.45
GSMUA_Achr1P24060_001	Banana	nucleus	28.53	37.3
GSMUA_Achr9P15540_001	Banana	nucleus	28.21	36.73
GSMUA_Achr11P...	Banana	nucleus	26.65	36.17
GSMUA_Achr3P20280_001	Banana	nucleus	26.65	36.02
GSMUA_Achr7P26700_001	Banana	nucleus	26.65	35.71
GSMUA_Achr5P24560_001	Banana	nucleus	26.33	35.59
GSMUA_Achr6P00050_001	Banana	nucleus	26.65	35.12
GSMUA_Achr8P04330_001	Banana	nucleus	26.65	34.69
GSMUA_Achr2P13650_001	Banana	nucleus	26.33	34.15
GSMUA_Achr7P00460_001	Banana	nucleus	26.65	34.0
GSMUA_Achr8P28100_001	Banana	nucleus	25.39	33.75
GSMUA_Achr3P15930_001	Banana	nucleus	25.39	33.75
GSMUA_Achr4P23540_001	Banana	nucleus	26.02	33.47
GSMUA_Achr3P30440_001	Banana	nucleus	23.82	33.04
GSMUA_Achr2P06250_001	Banana	nucleus	23.2	32.74
GSMUA_Achr3P25280_001	Banana	nucleus	25.71	30.83
GSMUA_Achr10P...	Banana	nucleus	27.27	30.53
GSMUA_Achr3P02280_001	Banana	nucleus	24.45	29.66
GSMUA_Achr6P06040_001	Banana	nucleus	16.61	22.46
GSMUA_Achr9P29310_001	Banana	nucleus	10.97	21.34

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr10G21480_001
EnsemblPlants:GSMUA_Achr10P21480_001	EnsemblPlants:GSMUA_Achr10T21480_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0RK73
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF187	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00029641AF	SEG:seg	:	:

Description

Floral homeotic protein AGAMOUS [Source:GMGC_GENE;Acc:GSMUA_Achr10G21480_001]

Coordinates

chr10:-:27075902..27086053

Molecular Weight (calculated)

36831.4 Da

IEP (calculated)

8.937

GRAVY (calculated)

-0.496

Length

319 amino acids

Sequence
(BLAST)

001: MDEDFTLFEC CHDSTLIQKY FPLTIINVPL NTQERGIAEL LVTIAVPFSP QTFFFASASA FLLLLLRRGA TLEPPARMGR GKIEIKRIEN TTNRQVTFCK
101: RRNGLLKKAY ELSVLCDADV ALIVFSSRGR LYEYATNSVK ATIDRYKKAC NGTTNTGFAS EDNAQYYQQE ASKLRQQINN LQSTNRSLMG ESLGSMSLRD
201: MKQLETRLEK GINKIRNKKN ELLFAEIEYM QKREMELQND NMYLRNKIAE NERAQQQMSM LPSARTTEYE IMPPYDSRNF LQVNAVQPTQ HYTHQQRTAL
301: QLGTPCTRWV MCSCCHFCR

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.