Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P00750_001 | Banana | nucleus | 82.64 | 82.64 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 78.1 | 80.43 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 21.49 | 77.61 |
| Os02t0682200-01 | Rice | nucleus | 73.55 | 71.2 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 69.83 | 69.26 |
| EES07448 | Sorghum | nucleus | 72.31 | 68.63 |
| GSMUA_Achr2P04350_001 | Banana | nucleus | 66.53 | 67.08 |
| HORVU0Hr1G032300.1 | Barley | nucleus | 71.49 | 64.79 |
| HORVU6Hr1G066140.9 | Barley | nucleus | 71.49 | 64.55 |
| KRH48304 | Soybean | nucleus | 64.88 | 64.08 |
| Solyc01g093960.2.1 | Tomato | nucleus | 66.12 | 63.49 |
| KXG26975 | Sorghum | nucleus | 61.57 | 63.4 |
| KRH65193 | Soybean | nucleus | 63.64 | 62.86 |
| PGSC0003DMT400000383 | Potato | nucleus | 65.7 | 62.35 |
| Os04t0580700-01 | Rice | nucleus | 63.64 | 60.63 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 64.88 | 60.62 |
| CDY18911 | Canola | nucleus | 59.09 | 60.34 |
| Bra004927.1-P | Field mustard | nucleus | 59.5 | 59.5 |
| CDY18912 | Canola | nucleus | 59.09 | 59.34 |
| GSMUA_Achr1P24060_001 | Banana | nucleus | 59.5 | 59.02 |
| AT2G45650.1 | Thale cress | nucleus | 61.16 | 58.73 |
| Zm00001d051465_P002 | Maize | nucleus | 70.66 | 58.36 |
| CDX74754 | Canola | nucleus | 61.57 | 58.2 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 65.29 | 58.09 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 65.7 | 54.83 |
| CDY53885 | Canola | nucleus | 57.02 | 53.7 |
| Bra000392.1-P | Field mustard | nucleus | 57.02 | 53.7 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 52.07 | 51.85 |
| Zm00001d017614_P003 | Maize | nucleus | 57.44 | 50.18 |
| GSMUA_Achr11P... | Banana | nucleus | 48.35 | 49.79 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 47.93 | 48.33 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 46.69 | 47.48 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 48.35 | 47.18 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 46.69 | 47.08 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 48.35 | 46.8 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 46.69 | 46.69 |
| AT3G61120.1 | Thale cress | nucleus | 46.69 | 46.31 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 50.0 | 46.01 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 46.69 | 45.94 |
| Bra014454.1-P | Field mustard | nucleus | 43.39 | 45.65 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 42.56 | 45.58 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 44.63 | 45.0 |
| CDX89097 | Canola | nucleus | 45.45 | 44.72 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 31.82 | 44.0 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 41.74 | 43.91 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 42.98 | 42.45 |
| GSMUA_Achr10P... | Banana | nucleus | 49.17 | 41.75 |
| GSMUA_Achr10P... | Banana | nucleus | 19.83 | 40.68 |
| GSMUA_Achr10P... | Banana | nucleus | 39.26 | 40.6 |
| GSMUA_Achr10P... | Banana | nucleus | 37.19 | 39.3 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 38.43 | 38.91 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 40.08 | 36.47 |
| GSMUA_Achr9P29310_001 | Banana | nucleus | 24.38 | 35.98 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 36.78 | 35.04 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 40.08 | 34.15 |
| GSMUA_Achr3P20280_001 | Banana | nucleus | 33.06 | 33.9 |
| GSMUA_Achr6P06040_001 | Banana | nucleus | 33.06 | 33.9 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 33.88 | 33.47 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 33.47 | 33.2 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 31.82 | 32.77 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 30.58 | 31.36 |
| CDY42485 | Canola | nucleus | 46.69 | 29.89 |
| GSMUA_Achr10P... | Banana | nucleus | 38.02 | 28.84 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr2G10250_001 |
| EnsemblPlants:GSMUA_Achr2P10250_001 | EnsemblPlants:GSMUA_Achr2T10250_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0S6R6 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0001CC913E | : | : | : |
Description
MADS-box transcription factor 6 [Source:GMGC_GENE;Acc:GSMUA_Achr2G10250_001]
Coordinates
chr2:-:13415412..13421469
Molecular Weight (calculated)
27792.4 Da
IEP (calculated)
9.431
GRAVY (calculated)
-0.635
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GMSKTLERYQ HWCYASQDPN VVNRDNAQNW CQEMSKLKAK
101: FESLQRSQRH LLGEDLGPLS VKELQQLERQ LESALSQARQ RKSQLILEQM EELRKKERHL GEINKQLRDQ IEVEGATLKA FQGSWCSDAM IGSNAFAAQP
201: SHSAGMDREP MLRIGYHQFV PADAAIPRNP IGENNFMLEW VP
101: FESLQRSQRH LLGEDLGPLS VKELQQLERQ LESALSQARQ RKSQLILEQM EELRKKERHL GEINKQLRDQ IEVEGATLKA FQGSWCSDAM IGSNAFAAQP
201: SHSAGMDREP MLRIGYHQFV PADAAIPRNP IGENNFMLEW VP
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
Arabidopsis Description
AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.