Factsheet for GSMUA_Achr3P04450_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00750_001
GSMUA_Achr2P06250_001
GSMUA_Achr2P10250_001
GSMUA_Achr2P18400_001
GSMUA_Achr2P18410_001
GSMUA_Achr3P05500_001
GSMUA_Achr3P08500_001
GSMUA_Achr3P15930_001
GSMUA_Achr3P24560_001
GSMUA_Achr4P14460_001
GSMUA_Achr4P30120_001
GSMUA_Achr7P26700_001
GSMUA_Achr8P06150_001
GSMUA_Achr8P28100_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	GSMUA_Achr2P06250_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr3P15930_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr4P14460_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr7P26700_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr8P28100_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr1P00750_001	AT2G45650.1	15805477
AT1G77980.1	GSMUA_Achr2P10250_001	AT2G45650.1	15805477
AT1G77980.1	GSMUA_Achr4P30120_001	AT2G45650.1	15805477
AT1G77980.1	GSMUA_Achr2P18400_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr2P18410_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr3P05500_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr3P08500_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr3P24560_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr8P06150_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_AchrUn_...	AT5G27960.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G290700.1	Wheat	nucleus	29.57	66.23
VIT_07s0031g01140.t01	Wine grape	nucleus	54.78	55.92
VIT_19s0014g00310.t01	Wine grape	nucleus	12.46	55.13
HORVU4Hr1G003610.5	Barley	nucleus	44.64	50.49
Os06t0223300-01	Rice	nucleus	51.88	49.72
Os08t0494100-02	Rice	nucleus	48.41	49.55
TraesCS4B01G023300.1	Wheat	nucleus	43.77	49.03
Zm00001d044850_P001	Maize	nucleus	39.13	48.56
KXG19627	Sorghum	nucleus	52.17	48.26
KRH18859	Soybean	nucleus	45.51	47.01
KRH16660	Soybean	nucleus	47.25	46.97
TraesCS4D01G021100.1	Wheat	nucleus	47.83	46.74
Zm00001d037212_P001	Maize	nucleus	48.7	45.65
AT1G77950.4	Thale cress	nucleus	32.75	44.84
CDX87492	Canola	nucleus	29.57	44.54
CDY01295	Canola	nucleus	39.71	44.05
Bra015645.1-P	Field mustard	nucleus	26.67	44.02
Bra012308.1-P	Field mustard	nucleus	42.32	43.58
CDY00423	Canola	nucleus	42.03	43.28
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	79.71	43.24
CDX91664	Canola	nucleus	42.32	43.2
CDY41491	Canola	nucleus	42.32	43.2
Bra016386.1-P	Field mustard	nucleus	38.84	43.09
AT1G22130.1	Thale cress	nucleus	41.74	42.99
CDX88401	Canola	nucleus	30.14	42.62
CDX87489	Canola	nucleus	39.13	41.03
CDX88402	Canola	nucleus	39.13	41.03
Bra015643.1-P	Field mustard	nucleus	39.13	41.03
AT1G77980.1	Thale cress	nucleus	37.97	39.46
GSMUA_Achr11P...	Banana	nucleus	19.42	29.39
Solyc05g051830.2.1	Tomato	nucleus	28.41	25.19
GSMUA_Achr2P01740_001	Banana	nucleus	23.77	24.05
GSMUA_Achr3P24170_001	Banana	nucleus	23.77	22.97

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr3G04450_001	EnsemblPlants:GSMUA_Achr3P04450_001
EnsemblPlants:GSMUA_Achr3T04450_001	InterPro:IPR002100	InterPro:IPR036879	UniProt:M0SBR3	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002948F7B	SEG:seg	:

Description

OsMADS63 - MADS-box family gene with MIKC* type-box, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G04450_001]

Coordinates

chr3:-:2894125..2895997

Molecular Weight (calculated)

38577.9 Da

IEP (calculated)

5.994

GRAVY (calculated)

-0.435

Length

345 amino acids

Sequence
(BLAST)

001: MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGR RRIEDVLARY VNLPENDRGG VVQNREFVIN TLKKLKCEND
101: TAALVNPGVV NSNAEELQQE ICRYQQQLQL MEQRLRFFEP DPLSFTSITD LESCEKFVME ALQRVTARKE YLLSNHLSPY DPSTTSMQCH ASILVQMYLQ
201: PQQERLPNPY GNEMVQWVPE GASNPSHQIF VGSDPLMDLR EHAIYDSIAP QSMGLQLDPG AAGCHVGNQH DTSWHQGYTS TEFLSALIPS PPYPLIQHPM
301: GPADLPTMVP HEQVQGMAGC PSVPVDDGGA ATNTYDGNAA PANVR

Best Arabidopsis Sequence Match ( AT1G22130.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ

Arabidopsis Description

AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.