Factsheet for VIT_19s0014g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g00110.t01
VIT_15s0021g02220.t01
VIT_15s0021g02250.t01
VIT_15s0048g01270.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	VIT_01s0011g00110.t01	AT2G03710.1	15805477
AT1G77980.1	VIT_15s0048g01270.t01	AT2G45650.1	15805477
AT1G77980.1	VIT_15s0021g02220.t01	AT5G58890.1	15805477
AT1G77980.1	VIT_15s0021g02250.t01	AT5G58890.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g00650.t01	Wine grape	cytosol	42.31	53.23
VIT_18s0001g04810.t01	Wine grape	nucleus	51.28	41.24
TraesCS4A01G290700.1	Wheat	nucleus	52.56	26.62
Bra015645.1-P	Field mustard	nucleus	53.85	20.1
CDX87492	Canola	nucleus	53.85	18.34
VIT_04s0008g01980.t01	Wine grape	mitochondrion	35.9	18.18
AT1G77950.4	Thale cress	nucleus	57.69	17.86
CDX88401	Canola	nucleus	55.13	17.62
Zm00001d044850_P001	Maize	nucleus	56.41	15.83
Bra016386.1-P	Field mustard	nucleus	57.69	14.47
AT1G77980.1	Thale cress	nucleus	60.26	14.16
CDY01295	Canola	nucleus	56.41	14.15
Os08t0494100-02	Rice	nucleus	60.26	13.95
KRH18859	Soybean	nucleus	57.69	13.47
HORVU4Hr1G003610.5	Barley	nucleus	52.56	13.44
CDX88402	Canola	nucleus	56.41	13.37
Bra015643.1-P	Field mustard	nucleus	56.41	13.37
CDX87489	Canola	nucleus	56.41	13.37
CDX91664	Canola	nucleus	57.69	13.31
CDY41491	Canola	nucleus	57.69	13.31
TraesCS4B01G023300.1	Wheat	nucleus	52.56	13.31
KRH16660	Soybean	nucleus	58.97	13.26
AT1G22130.1	Thale cress	nucleus	56.41	13.13
Bra012308.1-P	Field mustard	nucleus	56.41	13.13
VIT_18s0001g09540.t01	Wine grape	nucleus	53.85	13.04
CDY00423	Canola	nucleus	55.13	12.84
GSMUA_Achr3P04450_001	Banana	nucleus	55.13	12.46
VIT_07s0031g01140.t01	Wine grape	nucleus	53.85	12.43
Os06t0223300-01	Rice	nucleus	56.41	12.22
Zm00001d037212_P001	Maize	nucleus	56.41	11.96
KXG19627	Sorghum	nucleus	56.41	11.8
TraesCS4D01G021100.1	Wheat	nucleus	52.56	11.61
Solyc05g051830.2.1	Tomato	nucleus	46.15	9.25
VIT_17s0000g06340.t01	Wine grape	nucleus	42.31	8.8
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	56.41	6.92

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI20107	ProteinID:CBI20107.3	UniProt:E0CS08	EMBL:FN595229
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001BE1A42	ArrayExpress:VIT_19s0014g00310
EnsemblPlantsGene:VIT_19s0014g00310	EnsemblPlants:VIT_19s0014g00310.t01	:	:	:	:

Description

No Description!

Coordinates

chr19:+:329777..330095

Molecular Weight (calculated)

9169.3 Da

IEP (calculated)

10.853

GRAVY (calculated)

-0.631

Length

78 amino acids

Sequence
(BLAST)

1: MGRKIEMRKI ENTTRRQITF SKRKSSLIRK ANEISILCDV DVALLTYSPS GRLNKFCNRD RMEDVIKSYI NLSPAKRY

Best Arabidopsis Sequence Match ( AT1G77980.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ

Arabidopsis Description

AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.