Factsheet for VIT_18s0001g09540.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g00650.t01	Wine grape	cytosol	12.42	64.52
Solyc04g078300.2.1	Tomato	nucleus	62.73	60.48
VIT_19s0014g00310.t01	Wine grape	nucleus	13.04	53.85
VIT_18s0001g04810.t01	Wine grape	nucleus	16.15	53.61
KRH61376	Soybean	nucleus	45.96	45.54
VIT_07s0031g01140.t01	Wine grape	nucleus	38.82	36.98
VIT_04s0008g01980.t01	Wine grape	mitochondrion	13.66	28.57
VIT_17s0000g06340.t01	Wine grape	nucleus	28.57	24.53

Protein Annotations

EntrezGene:100253913	wikigene:100253913	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI19442	ProteinID:CBI19442.3
ncoils:Coil	UniProt:E0CPM9	EMBL:FN595227	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	EntrezGene:LOC100253913	wikigene:LOC100253913	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF224	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000198533A	ArrayExpress:VIT_18s0001g09540	EnsemblPlantsGene:VIT_18s0001g09540
EnsemblPlants:VIT_18s0001g09540.t01	unigene:Vvi.11822	RefSeq:XP_002285097	RefSeq:XP_002285097.1	:	:

Description

No Description!

Coordinates

chr18:+:7968577..7971244

Molecular Weight (calculated)

36691.7 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.638

Length

322 amino acids

Sequence
(BLAST)

001: MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSLFSGN KSIEEIMTRY VNLPEHERGR LHNQEFLQRA LGKLKSEANR
101: TYQAAASPMS TDSQLEEIQQ EILKYKSQLD DMQKRLRIFE GDPSEITTVR EVEYREQILE ETLKQVRFQK QALEEKYNTT EPQPTTQVHL PPETANVNGF
201: ISGNPNNMLD WLPPRDPQVQ ILNFLDSNGL LPMREQPQRM VEILPPSSTL LPGQNIHLED HMSPSSGMEE DNNVQRPQFG PAIDVNLSPW AEFYPTAGNG
301: SYPAAQPRGP ALLELFLSQF TP

Best Arabidopsis Sequence Match ( AT1G22130.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ

Arabidopsis Description

AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.