Factsheet for VIT_07s0031g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G290700.1	Wheat	nucleus	29.59	64.94
VIT_07s0129g00650.t01	Wine grape	cytosol	11.54	62.9
VIT_18s0001g04810.t01	Wine grape	nucleus	17.16	59.79
GSMUA_Achr3P04450_001	Banana	nucleus	55.92	54.78
VIT_19s0014g00310.t01	Wine grape	nucleus	12.43	53.85
Os08t0494100-02	Rice	nucleus	46.75	46.88
HORVU4Hr1G003610.5	Barley	nucleus	41.72	46.23
Zm00001d044850_P001	Maize	nucleus	37.57	45.68
KXG19627	Sorghum	nucleus	50.3	45.58
TraesCS4B01G023300.1	Wheat	nucleus	41.42	45.45
TraesCS4D01G021100.1	Wheat	nucleus	47.34	45.33
Os06t0223300-01	Rice	nucleus	46.45	43.61
Zm00001d037212_P001	Maize	nucleus	45.56	41.85
VIT_18s0001g09540.t01	Wine grape	nucleus	36.98	38.82
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	55.33	29.4
Solyc05g051830.2.1	Tomato	nucleus	31.95	27.76
VIT_17s0000g06340.t01	Wine grape	nucleus	29.29	26.4
VIT_04s0008g01980.t01	Wine grape	mitochondrion	11.54	25.32

Protein Annotations

EntrezGene:100254344	wikigene:100254344	EntrezGene:100262908	wikigene:100262908	MapMan:15.5.14	Gene3D:3.40.1810.10
ProteinID:CBI21466	ProteinID:CBI21466.3	ncoils:Coil	UniProt:D7SW17	EMBL:FN595233	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EntrezGene:LOC100254344	wikigene:LOC100254344
EntrezGene:LOC100262908	wikigene:LOC100262908	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001BE19C3	ArrayExpress:VIT_07s0031g01140	EnsemblPlantsGene:VIT_07s0031g01140
EnsemblPlants:VIT_07s0031g01140.t01	unigene:Vvi.22322	RefSeq:XP_002276834	RefSeq:XP_002276834.2	RefSeq:XP_002281300	RefSeq:XP_002281300.1

Description

No Description!

Coordinates

chr7:-:17253879..17256958

Molecular Weight (calculated)

37993.1 Da

IEP (calculated)

6.072

GRAVY (calculated)

-0.530

Length

338 amino acids

Sequence
(BLAST)

001: MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSH SGRLSHFSGK RRVEDVLTRY INLPDHERGG ILLNVQYLIS TLKKLKTEND
101: IALQLANPVA VNSNVEELNQ EINNLQHQLQ IAEEQLRIFE PDPLAFTSTG ELESCEKNLL EALNRVTERK KYLLSNHLST YDPASIQAYL DSQEGLPTSF
201: ENEVMGWLPE NGHNHTQMFG SDPCVPLRNH PSTNVYDNLG HGTSINVDPI NMGGCHISNS GCEGLPPWHH SYTSTELLSA LMPQPSYPPP KHEMAPGSII
301: PTMMPHQQME ATSNCQHLPS GEDDSAYDKA QLPQLHVE

Best Arabidopsis Sequence Match ( AT1G22130.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ

Arabidopsis Description

AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.