CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89250
EER91288
EES06917
EES07448
EES10067
KXG26975
KXG28888
KXG28889
KXG28890
KXG28892
KXG28893
KXG32310
KXG38099
OQU83804
OQU83806
OQU93000

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	EER89250	AT2G03710.1	15805477
AT1G77980.1	OQU93000	AT2G03710.1	15805477
AT1G77980.1	EES07448	AT2G45650.1	15805477
AT1G77980.1	KXG26975	AT2G45650.1	15805477
AT1G77980.1	EER91288	AT5G27960.1	15805477
AT1G77980.1	EES06917	AT5G27960.1	15805477
AT1G77980.1	EES10067	AT5G27960.1	15805477
AT1G77980.1	KXG28888	AT5G27960.1	15805477
AT1G77980.1	KXG28889	AT5G27960.1	15805477
AT1G77980.1	KXG28890	AT5G27960.1	15805477
AT1G77980.1	KXG28892	AT5G27960.1	15805477
AT1G77980.1	KXG28893	AT5G27960.1	15805477
AT1G77980.1	KXG32310	AT5G27960.1	15805477
AT1G77980.1	KXG38099	AT5G27960.1	15805477
AT1G77980.1	OQU83804	AT5G27960.1	15805477
AT1G77980.1	OQU83806	AT5G27960.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037212_P001	Maize	nucleus	76.94	77.99
Zm00001d044850_P001	Maize	nucleus	54.16	72.66
Os06t0223300-01	Rice	nucleus	54.96	56.94
VIT_19s0014g00310.t01	Wine grape	nucleus	11.8	56.41
GSMUA_Achr3P04450_001	Banana	nucleus	48.26	52.17
VIT_07s0031g01140.t01	Wine grape	nucleus	45.58	50.3
AT1G77950.4	Thale cress	nucleus	31.1	46.03
Bra015645.1-P	Field mustard	nucleus	25.47	45.45
KRH18859	Soybean	nucleus	40.21	44.91
CDX87492	Canola	nucleus	27.35	44.54
KRH16660	Soybean	nucleus	40.48	43.52
CDY01295	Canola	nucleus	35.66	42.77
CDX88401	Canola	nucleus	27.88	42.62
AT1G22130.1	Thale cress	nucleus	37.27	41.49
Bra012308.1-P	Field mustard	nucleus	37.27	41.49
CDY00423	Canola	nucleus	37.0	41.19
CDY41491	Canola	nucleus	37.27	41.12
Bra015643.1-P	Field mustard	nucleus	36.19	41.03
CDX88402	Canola	nucleus	36.19	41.03
CDX87489	Canola	nucleus	36.19	41.03
CDX91664	Canola	nucleus	37.0	40.83
Bra016386.1-P	Field mustard	nucleus	33.51	40.19
AT1G77980.1	Thale cress	nucleus	35.39	39.76
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	47.72	27.99
Solyc05g051830.2.1	Tomato	nucleus	24.4	23.39
KXG29049	Sorghum	nucleus	23.32	22.96

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A194YI31	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	EnsemblPlants:KXG19627	ProteinID:KXG19627	ProteinID:KXG19627.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	SMART:SM00432
EnsemblPlantsGene:SORBI_3010G090200	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0003C6B58F	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:7838338..7843781

Molecular Weight (calculated)

41281.1 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.384

Length

373 amino acids

Sequence
(BLAST)

001: MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SNRLSHFSGR RRIEDVITRY INLPEHDRGG VVRNREYLIK MLTQLKCEGD
101: IAEQLAPNKG PVNSNVEELQ QEIRTYQHQL QVLEEQLRMF EPDPVALASM HEVETCEKFL MDTLTRVEER KKYLLCNHMG PFEPSPSDMH HVFGLPPPPQ
201: PPAQQQQHEE EPQGDLGVNA FAGDVSSWFA DGLPTSSIFA GPDPILSFRD QVIFDSMRRD PVVGGVDPGI ASMCHVDQQA PSDDWQQAYT SAELLSALIP
301: STPFPLDDQD AMAPVLTSPM AVPPHMHEQV VEAPGNCSNV NVPVDGDCAA TATPAAAPVA PQEHGLPGAV NIG

Best Arabidopsis Sequence Match ( AT1G77980.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ

Arabidopsis Description

AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.