Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015645.1-P | Field mustard | nucleus | 80.79 | 88.52 |
| CDX88401 | Canola | nucleus | 92.14 | 86.48 |
| AT1G77950.4 | Thale cress | nucleus | 79.04 | 71.83 |
| VIT_19s0014g00310.t01 | Wine grape | nucleus | 18.34 | 53.85 |
| TraesCS4A01G290700.1 | Wheat | nucleus | 35.81 | 53.25 |
| CDX76715 | Canola | nucleus | 13.97 | 50.0 |
| CDY24740 | Canola | nucleus | 13.54 | 48.44 |
| CDY01295 | Canola | nucleus | 63.76 | 46.95 |
| CDY00423 | Canola | nucleus | 62.88 | 42.99 |
| CDY41491 | Canola | nucleus | 62.45 | 42.31 |
| CDX88402 | Canola | nucleus | 59.83 | 41.64 |
| CDY11489 | Canola | nucleus | 16.16 | 41.57 |
| CDX87489 | Canola | nucleus | 59.39 | 41.34 |
| CDX91664 | Canola | nucleus | 60.7 | 41.12 |
| CDX76718 | Canola | nucleus | 16.16 | 40.22 |
| KRH16660 | Soybean | nucleus | 53.28 | 35.16 |
| KRH18859 | Soybean | nucleus | 50.66 | 34.73 |
| CDX76713 | Canola | nucleus | 21.4 | 33.33 |
| HORVU4Hr1G003610.5 | Barley | nucleus | 41.05 | 30.82 |
| TraesCS4B01G023300.1 | Wheat | nucleus | 41.05 | 30.52 |
| CDX76717 | Canola | nucleus | 23.58 | 30.51 |
| TraesCS4D01G021100.1 | Wheat | nucleus | 46.72 | 30.31 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 44.54 | 29.57 |
| Os08t0494100-02 | Rice | nucleus | 43.23 | 29.38 |
| Zm00001d044850_P001 | Maize | nucleus | 34.93 | 28.78 |
| CDX69305 | Canola | nucleus | 24.89 | 28.08 |
| Os06t0223300-01 | Rice | nucleus | 43.23 | 27.5 |
| KXG19627 | Sorghum | nucleus | 44.54 | 27.35 |
| Zm00001d037212_P001 | Maize | nucleus | 41.92 | 26.09 |
| Solyc05g051830.2.1 | Tomato | nucleus | 33.62 | 19.79 |
| CDY26732 | Canola | nucleus | 28.82 | 17.55 |
| CDY58993 | Canola | nucleus | 28.38 | 17.15 |
| CDX95922 | Canola | mitochondrion | 27.07 | 16.99 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 45.85 | 16.51 |
| CDY45183 | Canola | nucleus | 27.07 | 16.45 |
| CDY03021 | Canola | nucleus | 27.07 | 15.82 |
| CDX96703 | Canola | nucleus | 29.69 | 15.6 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 26.64 | 14.63 |
| CDX83816 | Canola | nucleus | 28.82 | 12.74 |
| CDY60833 | Canola | nucleus | 23.58 | 12.74 |
| CDY17422 | Canola | nucleus | 24.02 | 11.2 |
| CDY26727 | Canola | extracellular | 9.61 | 10.53 |
| CDY64870 | Canola | nucleus | 4.8 | 4.62 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DEQ7 | EnsemblPlants:CDX87492 | ProteinID:CDX87492 | ProteinID:CDX87492.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00146480001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE325C | SEG:seg | : | : |
Description
BnaA07g33810D
Coordinates
chrLK031850:-:890856..894034
Molecular Weight (calculated)
26825.2 Da
IEP (calculated)
6.524
GRAVY (calculated)
-0.734
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAKLEIKP IQKSTNRQIT YSKRKKGLMK KAYELSTLCD IDLALLMFSP SDRLCLFSSQ TRIEDVLAKY INLPDQEREN AIVFPDRSKR QGIQNKGYLL
101: RTLEQLKTEN DMAFQINEPR HEAIHSDVEE LEKELCRLQQ QLQISEEELR KFEPDPVRFT SMEEMEACEN HLLSTLTRVV QRREHLLSRS CEAPSTQQSM
201: ENIEGWEPEA EFKQARIYNS KLSQCIKSL
101: RTLEQLKTEN DMAFQINEPR HEAIHSDVEE LEKELCRLQQ QLQISEEELR KFEPDPVRFT SMEEMEACEN HLLSTLTRVV QRREHLLSRS CEAPSTQQSM
201: ENIEGWEPEA EFKQARIYNS KLSQCIKSL
001: MGRVKLELKR IEKSTNRQIT FSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCLFSGQ TRIEDVLARY INLPDQEREN AIVFPDQSKR QGIQNKEYLL
101: RTLEKLKIED DMALQINEPR PEATNSNVEE LEQEVCRLQQ QLQISEEELR KFEPDPMRLT SMEEIEACEA NLINTLTRVV QRREHLLRKS CEAQSNQQSM
201: DGILLNDIVE DWGPEPEPKQ AHMIANSAHH SNQPSYDLLL RRSNSSSNQN PK
101: RTLEKLKIED DMALQINEPR PEATNSNVEE LEQEVCRLQQ QLQISEEELR KFEPDPMRLT SMEEIEACEA NLINTLTRVV QRREHLLRKS CEAQSNQQSM
201: DGILLNDIVE DWGPEPEPKQ AHMIANSAHH SNQPSYDLLL RRSNSSSNQN PK
Arabidopsis Description
AGL67AGAMOUS-like 67 [Source:UniProtKB/TrEMBL;Acc:F4I8L6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.