Factsheet for HORVU4Hr1G003610.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G032300.1
HORVU2Hr1G022060.1
HORVU4Hr1G067680.14
HORVU6Hr1G003730.1
HORVU6Hr1G066140.9
HORVU6Hr1G085540.1
HORVU6Hr1G085570.1
HORVU6Hr1G085670.1
HORVU7Hr1G025700.6
HORVU7Hr1G121600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	HORVU4Hr1G067680.14	AT2G03710.1	15805477
AT1G77980.1	HORVU7Hr1G025700.6	AT2G03710.1	15805477
AT1G77980.1	HORVU0Hr1G032300.1	AT2G45650.1	15805477
AT1G77980.1	HORVU6Hr1G066140.9	AT2G45650.1	15805477
AT1G77980.1	HORVU2Hr1G022060.1	AT5G27960.1	15805477
AT1G77980.1	HORVU6Hr1G003730.1	AT5G27960.1	15805477
AT1G77980.1	HORVU6Hr1G085540.1	AT5G27960.1	15805477
AT1G77980.1	HORVU6Hr1G085570.1	AT5G27960.1	15805477
AT1G77980.1	HORVU6Hr1G085670.1	AT5G27960.1	15805477
AT1G77980.1	HORVU7Hr1G121600.1	AT5G27960.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G023300.1	Wheat	nucleus	91.8	90.91
TraesCS4D01G021100.1	Wheat	nucleus	94.1	81.3
TraesCS4A01G290700.1	Wheat	nucleus	36.07	71.43
Os08t0494100-02	Rice	nucleus	68.52	62.02
VIT_19s0014g00310.t01	Wine grape	nucleus	13.44	52.56
GSMUA_Achr3P04450_001	Banana	nucleus	50.49	44.64
VIT_07s0031g01140.t01	Wine grape	nucleus	46.23	41.72
AT1G77950.4	Thale cress	nucleus	34.1	41.27
Bra015645.1-P	Field mustard	nucleus	28.2	41.15
CDX87492	Canola	nucleus	30.82	41.05
CDX88401	Canola	nucleus	31.15	38.93
Bra016386.1-P	Field mustard	nucleus	38.03	37.3
KRH18859	Soybean	nucleus	40.33	36.83
AT1G77980.1	Thale cress	nucleus	39.67	36.45
KRH16660	Soybean	nucleus	41.31	36.31
CDY41491	Canola	nucleus	39.34	35.5
CDX88402	Canola	nucleus	38.03	35.26
CDX91664	Canola	nucleus	39.02	35.21
CDY01295	Canola	nucleus	35.74	35.05
CDX87489	Canola	nucleus	37.7	34.95
Bra015643.1-P	Field mustard	nucleus	37.7	34.95
AT1G22130.1	Thale cress	nucleus	38.36	34.93
Bra012308.1-P	Field mustard	nucleus	38.36	34.93
CDY00423	Canola	nucleus	38.36	34.93
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	48.52	23.27
Solyc05g051830.2.1	Tomato	nucleus	25.57	20.05
HORVU4Hr1G032440.7	Barley	nucleus	25.25	19.9

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287MYV1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:HORVU4Hr1G003610
EnsemblPlants:HORVU4Hr1G003610.5	InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000B46A801	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr4H:-:7877053..7879060

Molecular Weight (calculated)

33513.7 Da

IEP (calculated)

4.558

GRAVY (calculated)

-0.438

Length

305 amino acids

Sequence
(BLAST)

001: MGRVKLAIKR IENNTNRHVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SRRLCPFSGR HGVEDVLLRY LNMSDNDRGE PVQNREEIQK EIYASQQQLQ
101: ISEERLRLFE PDPAACGSMG EIDGCEKFLM DMLTRVVERK NYLLSNLAPF DPTAPGMQGG NGAEMYVHAM KTEESGGMGA FAGDAAALWG SEDGQNSGHQ
201: IFGGTDPMIY LSDPDVYDGK SQATDPWRQA YSCTELLSTL IPNTPFPLMQ HCLGPDDGQY LPAMVPAGQD RLEASASCSY NMPTSDESGT PVMAYDGAVP
301: PPNVG

Best Arabidopsis Sequence Match ( AT1G77980.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ

Arabidopsis Description

AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.