Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41491 | Canola | nucleus | 97.63 | 97.63 |
| Bra016386.1-P | Field mustard | nucleus | 89.35 | 97.11 |
| CDY00423 | Canola | nucleus | 86.39 | 87.16 |
| AT1G22130.1 | Thale cress | nucleus | 84.91 | 85.67 |
| CDY01295 | Canola | nucleus | 78.7 | 85.53 |
| CDX88402 | Canola | nucleus | 73.67 | 75.68 |
| CDX87489 | Canola | nucleus | 73.37 | 75.38 |
| CDX87492 | Canola | nucleus | 41.12 | 60.7 |
| TraesCS4A01G290700.1 | Wheat | nucleus | 27.22 | 59.74 |
| CDX88401 | Canola | nucleus | 42.9 | 59.43 |
| VIT_19s0014g00310.t01 | Wine grape | nucleus | 13.31 | 57.69 |
| KRH18859 | Soybean | nucleus | 55.33 | 55.99 |
| KRH16660 | Soybean | nucleus | 55.62 | 54.18 |
| CDY24740 | Canola | nucleus | 8.88 | 46.88 |
| CDX76715 | Canola | nucleus | 8.58 | 45.31 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 43.2 | 42.32 |
| CDY11489 | Canola | nucleus | 10.65 | 40.45 |
| Zm00001d044850_P001 | Maize | nucleus | 33.14 | 40.29 |
| Os08t0494100-02 | Rice | nucleus | 39.35 | 39.47 |
| HORVU4Hr1G003610.5 | Barley | nucleus | 35.21 | 39.02 |
| TraesCS4B01G023300.1 | Wheat | nucleus | 35.5 | 38.96 |
| Os06t0223300-01 | Rice | nucleus | 41.42 | 38.89 |
| TraesCS4D01G021100.1 | Wheat | nucleus | 40.53 | 38.81 |
| CDX76718 | Canola | nucleus | 10.36 | 38.04 |
| KXG19627 | Sorghum | nucleus | 40.83 | 37.0 |
| Zm00001d037212_P001 | Maize | nucleus | 39.35 | 36.14 |
| CDX76713 | Canola | nucleus | 12.72 | 29.25 |
| CDX69305 | Canola | nucleus | 17.16 | 28.57 |
| CDX76717 | Canola | nucleus | 14.5 | 27.68 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 44.38 | 23.58 |
| Solyc05g051830.2.1 | Tomato | nucleus | 26.63 | 23.14 |
| CDY58993 | Canola | nucleus | 25.44 | 22.69 |
| CDY26732 | Canola | nucleus | 24.26 | 21.81 |
| CDY45183 | Canola | nucleus | 22.78 | 20.42 |
| CDY03021 | Canola | nucleus | 23.08 | 19.9 |
| CDX96703 | Canola | nucleus | 25.15 | 19.5 |
| CDX95922 | Canola | mitochondrion | 20.71 | 19.18 |
| CDY60833 | Canola | nucleus | 20.71 | 16.51 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 20.12 | 16.31 |
| CDX83816 | Canola | nucleus | 24.56 | 16.02 |
| CDY17422 | Canola | nucleus | 20.41 | 14.05 |
| CDY26727 | Canola | extracellular | 7.99 | 12.92 |
| CDY64870 | Canola | nucleus | 6.8 | 9.66 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DT54 | EnsemblPlants:CDX91664 | ProteinID:CDX91664 | ProteinID:CDX91664.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00153123001 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDDBF9 | SEG:seg |
Description
BnaC08g05830D
Coordinates
chrLK031869:-:8000..9980
Molecular Weight (calculated)
38470.3 Da
IEP (calculated)
4.631
GRAVY (calculated)
-0.574
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFTRF INLSNQEREN ALVFPDQDRR PDIQSKECLL
101: RILQQLKTEN DIALQLTNPA AIKSDVEELE QEVCRLHQQL QMAEEELRRY EPDPVRFTSM EDYEVCEKQL LDTLTHVVQR REYLVSSHLS SYETSTMQQG
201: IAGPFANGVL EGWLPENGHN QVNLFDASAH SNQLRELSSA MYEPLMQGSS SSSNQNNMSE CHVTNHNGDM FSEWAQAYSS SALFPSMNQH GSVGPSIEEM
301: MPGQQSEIPA VTTMEAPQQA KLEVVDDYET RVPQLSSQ
101: RILQQLKTEN DIALQLTNPA AIKSDVEELE QEVCRLHQQL QMAEEELRRY EPDPVRFTSM EDYEVCEKQL LDTLTHVVQR REYLVSSHLS SYETSTMQQG
201: IAGPFANGVL EGWLPENGHN QVNLFDASAH SNQLRELSSA MYEPLMQGSS SSSNQNNMSE CHVTNHNGDM FSEWAQAYSS SALFPSMNQH GSVGPSIEEM
301: MPGQQSEIPA VTTMEAPQQA KLEVVDDYET RVPQLSSQ
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ
Arabidopsis Description
AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.