Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76715 | Canola | nucleus | 95.31 | 95.31 |
| CDY11489 | Canola | nucleus | 93.75 | 67.42 |
| CDX76718 | Canola | nucleus | 96.88 | 67.39 |
| CDX76713 | Canola | nucleus | 93.75 | 40.82 |
| AT2G26320.1 | Thale cress | nucleus | 68.75 | 40.37 |
| CDX76717 | Canola | nucleus | 92.19 | 33.33 |
| VIT_04s0008g01980.t01 | Wine grape | mitochondrion | 43.75 | 18.18 |
| CDX69305 | Canola | nucleus | 43.75 | 13.79 |
| CDX87492 | Canola | nucleus | 48.44 | 13.54 |
| CDX88401 | Canola | nucleus | 46.88 | 12.3 |
| CDY01295 | Canola | nucleus | 46.88 | 9.65 |
| CDX88402 | Canola | nucleus | 48.44 | 9.42 |
| CDX87489 | Canola | nucleus | 48.44 | 9.42 |
| CDY00423 | Canola | nucleus | 46.88 | 8.96 |
| CDX91664 | Canola | nucleus | 46.88 | 8.88 |
| CDY41491 | Canola | nucleus | 46.88 | 8.88 |
| CDY26732 | Canola | nucleus | 50.0 | 8.51 |
| CDY58993 | Canola | nucleus | 50.0 | 8.44 |
| CDY45183 | Canola | nucleus | 43.75 | 7.43 |
| CDX95922 | Canola | mitochondrion | 42.19 | 7.4 |
| CDX96703 | Canola | nucleus | 50.0 | 7.34 |
| CDY03021 | Canola | nucleus | 43.75 | 7.14 |
| CDY60833 | Canola | nucleus | 43.75 | 6.6 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 42.19 | 6.47 |
| CDX83816 | Canola | nucleus | 50.0 | 6.18 |
| CDY17422 | Canola | nucleus | 45.31 | 5.91 |
| CDY26727 | Canola | extracellular | 9.38 | 2.87 |
| CDY64870 | Canola | nucleus | 6.25 | 1.68 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GDW4 | UniProt:A0A078GDW4 | EnsemblPlants:CDY24740 | ProteinID:CDY24740 |
| ProteinID:CDY24740.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00027140001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF156 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0004EEEB52 | SEG:seg | : | : | : | : |
Description
BnaC04g13450DBnaC04g13450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDW4]
Coordinates
chrLK032163:+:193663..193857
Molecular Weight (calculated)
7415.3 Da
IEP (calculated)
10.439
GRAVY (calculated)
-0.475
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MGRKKIELKT IECPKEKSSK YSKRKKGLLK KAEEMAILCD SDIILLVFSP TSKPNLFYPH SRLF
001: MKRTIKNKNK QIVKENMGRK KLKLKRIESL KERSSKFSKR KKGLFKKAEE VALLCDSDIM LIVVSPTEKP TVFNTRSRSF HTILERFCML SLQEREERCD
101: LSYFYIIIT
101: LSYFYIIIT
Arabidopsis Description
AGL33AGAMOUS-like 33 [Source:UniProtKB/TrEMBL;Acc:O64840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.