Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031049.1-P | Field mustard | nucleus | 94.99 | 94.24 |
| CDY26732 | Canola | nucleus | 82.59 | 83.24 |
| AT1G18750.3 | Thale cress | nucleus | 88.13 | 80.87 |
| CDX96703 | Canola | nucleus | 86.28 | 75.0 |
| CDY26727 | Canola | extracellular | 37.73 | 68.42 |
| CDX83816 | Canola | nucleus | 86.81 | 63.51 |
| CDY64870 | Canola | nucleus | 39.31 | 62.6 |
| VIT_17s0000g06340.t01 | Wine grape | nucleus | 51.72 | 52.27 |
| GSMUA_Achr11P... | Banana | nucleus | 30.34 | 50.44 |
| CDY24740 | Canola | nucleus | 8.44 | 50.0 |
| PGSC0003DMT400050265 | Potato | nucleus | 18.21 | 48.59 |
| CDX76715 | Canola | nucleus | 8.18 | 48.44 |
| GSMUA_Achr2P01740_001 | Banana | nucleus | 40.37 | 44.87 |
| GSMUA_Achr3P24170_001 | Banana | nucleus | 42.22 | 44.82 |
| KXG29049 | Sorghum | nucleus | 43.01 | 43.01 |
| TraesCS4D01G147000.1 | Wheat | nucleus | 40.37 | 39.33 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 40.37 | 39.33 |
| Os11t0658700-01 | Rice | nucleus | 40.63 | 39.29 |
| CDX76718 | Canola | nucleus | 9.5 | 39.13 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 39.84 | 39.02 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 39.84 | 39.02 |
| CDY11489 | Canola | nucleus | 8.97 | 38.2 |
| CDX95922 | Canola | mitochondrion | 36.41 | 37.81 |
| CDY45183 | Canola | nucleus | 37.47 | 37.67 |
| CDY03021 | Canola | nucleus | 37.2 | 35.97 |
| CDY60833 | Canola | nucleus | 38.52 | 34.43 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 35.88 | 32.61 |
| CDY17422 | Canola | nucleus | 38.26 | 29.53 |
| Solyc03g115910.1.1 | Tomato | plastid | 32.45 | 29.5 |
| CDX76713 | Canola | nucleus | 11.35 | 29.25 |
| CDX87492 | Canola | nucleus | 17.15 | 28.38 |
| CDY01295 | Canola | nucleus | 22.16 | 27.01 |
| CDX88401 | Canola | nucleus | 17.15 | 26.64 |
| CDY41491 | Canola | nucleus | 23.22 | 26.04 |
| CDX76717 | Canola | nucleus | 12.14 | 25.99 |
| CDX91664 | Canola | nucleus | 22.69 | 25.44 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 32.72 | 25.25 |
| CDY00423 | Canola | nucleus | 22.16 | 25.07 |
| CDX88402 | Canola | nucleus | 21.64 | 24.92 |
| CDX87489 | Canola | nucleus | 21.37 | 24.62 |
| CDX69305 | Canola | nucleus | 12.14 | 22.66 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078J4M2 | UniProt:A0A078J4M2 | EnsemblPlants:CDY58993 | ProteinID:CDY58993 |
| ProteinID:CDY58993.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00025435001 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF156 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0004EE19C1 | SEG:seg | : | : | : | : |
Description
BnaC08g49460DBnaC08g49460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4M2]
Coordinates
chrLK033717:-:11132..13163
Molecular Weight (calculated)
43426.4 Da
IEP (calculated)
6.322
GRAVY (calculated)
-0.688
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHEFLGAR NQTIEGLSNQ VAIFQAQLME CHRRLSCWTN INRIENTEHL NLLEESLRKS IERIQIHKEH YRNSQLMPIE CTTTQFHSGI QLPLEMGGNS
201: SSMQEAHPMS WLPDNDNQQT ILPGDSSFLP HREMDGSIPV YSNCFFESVK QEDQICNNPG QTFEQLEQQG NGCLGLQQIG EEYSYPTSFG TSLGMEEDQE
301: KKIKSEMELN NLQQQQQQDP SSVYDPRANN GGCFQIPHDQ SMFATDHHQH HHQNWVPDSM LGQTSYSQVC VSHLPFEII
101: VNIHEFLGAR NQTIEGLSNQ VAIFQAQLME CHRRLSCWTN INRIENTEHL NLLEESLRKS IERIQIHKEH YRNSQLMPIE CTTTQFHSGI QLPLEMGGNS
201: SSMQEAHPMS WLPDNDNQQT ILPGDSSFLP HREMDGSIPV YSNCFFESVK QEDQICNNPG QTFEQLEQQG NGCLGLQQIG EEYSYPTSFG TSLGMEEDQE
301: KKIKSEMELN NLQQQQQQDP SSVYDPRANN GGCFQIPHDQ SMFATDHHQH HHQNWVPDSM LGQTSYSQVC VSHLPFEII
001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
Arabidopsis Description
AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.