Factsheet for VIT_17s0000g06340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03491	Soybean	nucleus	56.0	59.32
VIT_07s0129g00650.t01	Wine grape	cytosol	9.6	58.06
KRH56901	Soybean	nucleus	51.47	57.1
GSMUA_Achr3P24170_001	Banana	nucleus	53.87	56.58
PGSC0003DMT400050265	Potato	nucleus	21.07	55.63
GSMUA_Achr11P...	Banana	nucleus	33.6	55.26
GSMUA_Achr2P01740_001	Banana	nucleus	50.13	55.13
CDY58993	Canola	nucleus	52.27	51.72
KXG29049	Sorghum	nucleus	51.47	50.92
Bra031049.1-P	Field mustard	nucleus	51.2	50.26
CDY26732	Canola	nucleus	49.87	49.73
TraesCS4B01G150200.1	Wheat	nucleus	50.93	49.1
TraesCS4D01G147000.1	Wheat	nucleus	50.67	48.84
HORVU4Hr1G032440.7	Barley	nucleus	50.4	48.84
TraesCS4A01G169000.1	Wheat	nucleus	50.13	48.58
Os11t0658700-01	Rice	nucleus	50.4	48.21
Bra016544.1-P	Field mustard	nucleus	39.2	48.04
Bra025685.1-P	Field mustard	nucleus	48.27	47.76
AT1G18750.3	Thale cress	nucleus	52.53	47.7
CDX96703	Canola	nucleus	51.73	44.5
VIT_19s0014g00310.t01	Wine grape	nucleus	8.8	42.31
VIT_18s0001g04810.t01	Wine grape	nucleus	10.93	42.27
CDX83816	Canola	nucleus	52.8	38.22
Solyc03g115910.1.1	Tomato	plastid	42.4	38.13
VIT_04s0008g01980.t01	Wine grape	mitochondrion	15.2	37.01
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	40.8	31.16
VIT_07s0031g01140.t01	Wine grape	nucleus	26.4	29.29
VIT_18s0001g09540.t01	Wine grape	nucleus	24.53	28.57

Protein Annotations

EntrezGene:100250157	wikigene:100250157	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI15211	ProteinID:CBI15211.3
ncoils:Coil	UniProt:D7SIA1	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
EntrezGene:LOC100250157	wikigene:LOC100250157	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF156	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001BE0B5B
ArrayExpress:VIT_17s0000g06340	EnsemblPlantsGene:VIT_17s0000g06340	EnsemblPlants:VIT_17s0000g06340.t01	unigene:Vvi.12507	RefSeq:XP_002281961	RefSeq:XP_002281961.2

Description

No Description!

Coordinates

chr17:+:6880761..6886279

Molecular Weight (calculated)

42488.3 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.669

Length

375 amino acids

Sequence
(BLAST)

001: MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IEIILLMFSP TGRPTLFHGA RSDIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD
101: VNLQDFLGAS TQTIEELTNQ ARLLQAQLTE VHKRLSYWSN PDKVDSTEHL RQMEDSLRES LNRIRVHKEN FGKHQLMSLE CASQFQNGMH LPLIMDGVQE
201: AQPLSWLPNN ENQHLILPEE PSYLPQRDME CSADASIPGY SGYYSTGKQT EIGNSGQVDE QGQEGSALNQ LSGNSNLRLQ LSEQYLYSPF GNLNLPDEKK
301: LKPEMEMNLQ GNPVDYQVNG NFEIPAPIYD NRQHTWVSAS GPCSIAMFDE NSFSQGNVPP IVHSAFPDSQ QNSLS

Best Arabidopsis Sequence Match ( AT1G18750.1 )
(BLAST)

001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR

Arabidopsis Description

AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.