Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58993 | Canola | nucleus | 80.87 | 88.13 |
| Bra031049.1-P | Field mustard | nucleus | 81.11 | 87.7 |
| Bra016544.1-P | Field mustard | nucleus | 63.68 | 85.95 |
| CDY26732 | Canola | nucleus | 74.09 | 81.38 |
| Bra025685.1-P | Field mustard | nucleus | 72.88 | 79.42 |
| CDX96703 | Canola | nucleus | 79.18 | 75.0 |
| CDX83816 | Canola | nucleus | 79.42 | 63.32 |
| VIT_17s0000g06340.t01 | Wine grape | nucleus | 47.7 | 52.53 |
| PGSC0003DMT400050265 | Potato | nucleus | 16.95 | 49.3 |
| GSMUA_Achr11P... | Banana | nucleus | 27.12 | 49.12 |
| KRH03491 | Soybean | nucleus | 39.71 | 46.33 |
| KRH56901 | Soybean | nucleus | 37.05 | 45.27 |
| GSMUA_Achr3P24170_001 | Banana | nucleus | 38.26 | 44.26 |
| GSMUA_Achr2P01740_001 | Banana | nucleus | 36.08 | 43.7 |
| KXG29049 | Sorghum | nucleus | 39.95 | 43.54 |
| TraesCS4D01G147000.1 | Wheat | nucleus | 37.29 | 39.59 |
| Os11t0658700-01 | Rice | nucleus | 37.53 | 39.54 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 37.05 | 39.33 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 36.8 | 39.28 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 36.8 | 39.28 |
| AT2G03060.2 | Thale cress | nucleus | 36.32 | 38.86 |
| AT1G69540.2 | Thale cress | nucleus | 30.75 | 34.6 |
| AT2G26320.1 | Thale cress | nucleus | 8.72 | 33.03 |
| AT4G37435.1 | Thale cress | nucleus | 13.56 | 30.11 |
| Solyc03g115910.1.1 | Tomato | plastid | 29.78 | 29.5 |
| AT1G77950.4 | Thale cress | nucleus | 17.43 | 28.57 |
| AT1G77980.1 | Thale cress | nucleus | 21.07 | 26.2 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 30.27 | 25.46 |
| AT1G22130.1 | Thale cress | nucleus | 20.58 | 25.37 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:838457 | UniProt:A0A1P8AR61 | Symbol:AGL65 | ProteinID:ANM59114.1 |
| ProteinID:ANM59117.1 | ArrayExpress:AT1G18750 | EnsemblPlantsGene:AT1G18750 | RefSeq:AT1G18750 | TAIR:AT1G18750 | RefSeq:AT1G18750-TAIR-G |
| EnsemblPlants:AT1G18750.3 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_001321504.1 | RefSeq:NP_001321507.1 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF156 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000848684F | SEG:seg | : | : | : |
Description
AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
Coordinates
chr1:+:6466667..6469984
Molecular Weight (calculated)
47786.7 Da
IEP (calculated)
6.687
GRAVY (calculated)
-0.736
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEVWIDH LRFMNFLGYF LISLSQIAKV CVNITTRQGL SNQVAIYQAQ LMECHRRLSC WTNIDRIENT EHLDLLEESL RKSIERIQIH
201: KEHYRKNQLL PIECATTQFH SGIQLPMAMG GNSSMQEAHS MSWLPDNDHQ QTILPGDSSF LPHREMDGSI PVYSSCFFES TKPEDQICSN PGQQFEQLEQ
301: QGNGCLGLQQ LGEEYSYPTP FGTTLGMEED QEKKIKSEME LNNLQQQQQQ QQQQQQQDPS MYDPMANNNG GCFQIPHDQS MFVNDHHHHH HHHHQNWVPD
401: SMFGQTSYNQ QPN
101: VNIHDFLGAR NQTIEVWIDH LRFMNFLGYF LISLSQIAKV CVNITTRQGL SNQVAIYQAQ LMECHRRLSC WTNIDRIENT EHLDLLEESL RKSIERIQIH
201: KEHYRKNQLL PIECATTQFH SGIQLPMAMG GNSSMQEAHS MSWLPDNDHQ QTILPGDSSF LPHREMDGSI PVYSSCFFES TKPEDQICSN PGQQFEQLEQ
301: QGNGCLGLQQ LGEEYSYPTP FGTTLGMEED QEKKIKSEME LNNLQQQQQQ QQQQQQQDPS MYDPMANNNG GCFQIPHDQS MFVNDHHHHH HHHHQNWVPD
401: SMFGQTSYNQ QPN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.