Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016544.1-P | Field mustard | nucleus | 68.58 | 97.71 |
| CDY58993 | Canola | nucleus | 75.0 | 86.28 |
| CDY26732 | Canola | nucleus | 71.1 | 82.45 |
| AT1G18750.3 | Thale cress | nucleus | 75.0 | 79.18 |
| CDX83816 | Canola | nucleus | 84.86 | 71.43 |
| CDY26727 | Canola | extracellular | 30.73 | 64.11 |
| CDY64870 | Canola | nucleus | 34.63 | 63.45 |
| VIT_17s0000g06340.t01 | Wine grape | nucleus | 44.5 | 51.73 |
| GSMUA_Achr11P... | Banana | nucleus | 26.15 | 50.0 |
| CDY24740 | Canola | nucleus | 7.34 | 50.0 |
| PGSC0003DMT400050265 | Potato | nucleus | 15.83 | 48.59 |
| CDX76715 | Canola | nucleus | 7.11 | 48.44 |
| GSMUA_Achr3P24170_001 | Banana | nucleus | 36.01 | 43.98 |
| GSMUA_Achr2P01740_001 | Banana | nucleus | 34.17 | 43.7 |
| KXG29049 | Sorghum | nucleus | 37.16 | 42.74 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 35.32 | 39.59 |
| TraesCS4D01G147000.1 | Wheat | nucleus | 35.09 | 39.33 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 34.86 | 39.28 |
| CDX76718 | Canola | nucleus | 8.26 | 39.13 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 34.63 | 39.02 |
| Os11t0658700-01 | Rice | nucleus | 34.86 | 38.78 |
| CDY11489 | Canola | nucleus | 7.8 | 38.2 |
| CDY45183 | Canola | nucleus | 32.11 | 37.14 |
| CDX95922 | Canola | mitochondrion | 30.5 | 36.44 |
| CDY03021 | Canola | nucleus | 32.11 | 35.71 |
| CDY60833 | Canola | nucleus | 33.03 | 33.96 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 30.05 | 31.41 |
| CDX87492 | Canola | nucleus | 15.6 | 29.69 |
| CDY17422 | Canola | nucleus | 33.03 | 29.33 |
| Solyc03g115910.1.1 | Tomato | plastid | 27.98 | 29.26 |
| CDX76713 | Canola | nucleus | 9.86 | 29.25 |
| CDX88401 | Canola | nucleus | 15.6 | 27.87 |
| CDY01295 | Canola | nucleus | 19.5 | 27.33 |
| CDX76717 | Canola | nucleus | 10.55 | 25.99 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 29.13 | 25.87 |
| CDY41491 | Canola | nucleus | 19.95 | 25.74 |
| CDY00423 | Canola | nucleus | 19.5 | 25.37 |
| CDX91664 | Canola | nucleus | 19.5 | 25.15 |
| CDX88402 | Canola | nucleus | 18.58 | 24.62 |
| CDX87489 | Canola | nucleus | 18.35 | 24.32 |
| CDX69305 | Canola | nucleus | 10.09 | 21.67 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EBF1 | EnsemblPlants:CDX96703 | ProteinID:CDX96703 | ProteinID:CDX96703.1 |
| ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00102917001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF156 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF2863 |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g22460D
Coordinates
chrLK031895:-:638415..640671
Molecular Weight (calculated)
50374.8 Da
IEP (calculated)
6.657
GRAVY (calculated)
-0.687
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE HSCIEDVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIQEFLGAR NQTIEGLSNQ VAISQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQFHKEH YTKNQLLPLD CTTTQFHSGI QLPLAMEGNN
201: SMQEAHSMSW LPNNDNQETI LPGESSFIPH REMDGLNPVY SNGFFESVKQ EDQMCSNQGQ QFEQLEQQQG HGCLGLQQIG EEFSYPTPFG TTLGMDEDQE
301: KKIKSEMELN NLQQQQQQQQ QQDPSSMYAP TANNGGCFQN PHDQSMFSTD HHHHYQHYQH HQNWVPGSVF SQASYNQVCV PWELSNYVIH QTKYVSVYLV
401: IAATKLITKE RAHHVCNLIL WMMTLRMNKD EFEPLL
101: VNIQEFLGAR NQTIEGLSNQ VAISQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQFHKEH YTKNQLLPLD CTTTQFHSGI QLPLAMEGNN
201: SMQEAHSMSW LPNNDNQETI LPGESSFIPH REMDGLNPVY SNGFFESVKQ EDQMCSNQGQ QFEQLEQQQG HGCLGLQQIG EEFSYPTPFG TTLGMDEDQE
301: KKIKSEMELN NLQQQQQQQQ QQDPSSMYAP TANNGGCFQN PHDQSMFSTD HHHHYQHYQH HQNWVPGSVF SQASYNQVCV PWELSNYVIH QTKYVSVYLV
401: IAATKLITKE RAHHVCNLIL WMMTLRMNKD EFEPLL
001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
Arabidopsis Description
AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.