Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87492 | Canola | nucleus | 86.48 | 92.14 |
| Bra015645.1-P | Field mustard | nucleus | 73.36 | 85.65 |
| AT1G77950.4 | Thale cress | nucleus | 77.46 | 75.0 |
| VIT_19s0014g00310.t01 | Wine grape | nucleus | 17.62 | 55.13 |
| TraesCS4A01G290700.1 | Wheat | nucleus | 34.43 | 54.55 |
| CDY01295 | Canola | nucleus | 61.89 | 48.55 |
| CDX76715 | Canola | nucleus | 12.7 | 48.44 |
| CDY24740 | Canola | nucleus | 12.3 | 46.88 |
| CDY00423 | Canola | nucleus | 61.07 | 44.48 |
| CDY41491 | Canola | nucleus | 61.07 | 44.08 |
| CDX91664 | Canola | nucleus | 59.43 | 42.9 |
| CDX88402 | Canola | nucleus | 57.79 | 42.86 |
| CDX87489 | Canola | nucleus | 57.38 | 42.55 |
| CDY11489 | Canola | nucleus | 14.75 | 40.45 |
| CDX76718 | Canola | nucleus | 14.75 | 39.13 |
| KRH16660 | Soybean | nucleus | 52.46 | 36.89 |
| KRH18859 | Soybean | nucleus | 50.0 | 36.53 |
| CDX76713 | Canola | nucleus | 19.67 | 32.65 |
| TraesCS4D01G021100.1 | Wheat | nucleus | 45.08 | 31.16 |
| HORVU4Hr1G003610.5 | Barley | nucleus | 38.93 | 31.15 |
| Os08t0494100-02 | Rice | nucleus | 42.62 | 30.86 |
| TraesCS4B01G023300.1 | Wheat | nucleus | 38.52 | 30.52 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 42.62 | 30.14 |
| CDX76717 | Canola | nucleus | 21.72 | 29.94 |
| Zm00001d044850_P001 | Maize | nucleus | 32.79 | 28.78 |
| Os06t0223300-01 | Rice | nucleus | 42.21 | 28.61 |
| KXG19627 | Sorghum | nucleus | 42.62 | 27.88 |
| Zm00001d037212_P001 | Maize | nucleus | 40.98 | 27.17 |
| CDX69305 | Canola | nucleus | 21.72 | 26.11 |
| Solyc05g051830.2.1 | Tomato | nucleus | 33.2 | 20.82 |
| CDY58993 | Canola | nucleus | 26.64 | 17.15 |
| CDY26732 | Canola | nucleus | 26.23 | 17.02 |
| CDX95922 | Canola | mitochondrion | 25.0 | 16.71 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 43.44 | 16.67 |
| CDY45183 | Canola | nucleus | 25.41 | 16.45 |
| CDY03021 | Canola | nucleus | 25.41 | 15.82 |
| CDX96703 | Canola | nucleus | 27.87 | 15.6 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 24.59 | 14.39 |
| CDY60833 | Canola | nucleus | 22.95 | 13.21 |
| CDX83816 | Canola | nucleus | 27.05 | 12.74 |
| CDY17422 | Canola | nucleus | 23.36 | 11.61 |
| CDY26727 | Canola | extracellular | 8.61 | 10.05 |
| CDY64870 | Canola | nucleus | 4.51 | 4.62 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DGK1 | EnsemblPlants:CDX88401 | ProteinID:CDX88401 | ProteinID:CDX88401.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00147933001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EBC0F2 | SEG:seg | : | : |
Description
BnaC06g38450D
Coordinates
chrLK031855:+:782185..786214
Molecular Weight (calculated)
28494.0 Da
IEP (calculated)
5.808
GRAVY (calculated)
-0.718
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAKLEIKP IQKSTNRQIT YSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCIFSSE TRIEDVLAKY INLPDQEREN AIVFPDRSKR QGIQNKEYLL
101: RTLEQLKTEN DMAFQINEPR YEAIHSDVKE LEKELCRLQQ QLQISEEELR KFEPDPVRFT SMEEMEACEN HLLSTLTRMV QRREHLLSRS FEAPSTQQSI
201: ENIEGWEPEA EFKQARIIAN SAYASNHYDL PLQGIISNPT QTPK
101: RTLEQLKTEN DMAFQINEPR YEAIHSDVKE LEKELCRLQQ QLQISEEELR KFEPDPVRFT SMEEMEACEN HLLSTLTRMV QRREHLLSRS FEAPSTQQSI
201: ENIEGWEPEA EFKQARIIAN SAYASNHYDL PLQGIISNPT QTPK
001: MGRVKLELKR IEKSTNRQIT FSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCLFSGQ TRIEDVLARY INLPDQEREN AIVFPDQSKR QGIQNKEYLL
101: RTLEKLKIED DMALQINEPR PEATNSNVEE LEQEVCRLQQ QLQISEEELR KFEPDPMRLT SMEEIEACEA NLINTLTRVV QRREHLLRKS CEAQSNQQSM
201: DGILLNDIVE DWGPEPEPKQ AHMIANSAHH SNQPSYDLLL RRSNSSSNQN PK
101: RTLEKLKIED DMALQINEPR PEATNSNVEE LEQEVCRLQQ QLQISEEELR KFEPDPMRLT SMEEIEACEA NLINTLTRVV QRREHLLRKS CEAQSNQQSM
201: DGILLNDIVE DWGPEPEPKQ AHMIANSAHH SNQPSYDLLL RRSNSSSNQN PK
Arabidopsis Description
AGL67AGAMOUS-like 67 [Source:UniProtKB/TrEMBL;Acc:F4I8L6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.