Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012308.1-P | Field mustard | nucleus | 98.21 | 98.21 |
| CDY01295 | Canola | nucleus | 86.57 | 93.25 |
| CDY41491 | Canola | nucleus | 87.46 | 86.69 |
| CDX91664 | Canola | nucleus | 87.16 | 86.39 |
| AT1G22130.1 | Thale cress | nucleus | 84.78 | 84.78 |
| CDX88402 | Canola | nucleus | 72.84 | 74.16 |
| CDX87489 | Canola | nucleus | 71.94 | 73.25 |
| CDX87492 | Canola | nucleus | 42.99 | 62.88 |
| CDX88401 | Canola | nucleus | 44.48 | 61.07 |
| TraesCS4A01G290700.1 | Wheat | nucleus | 26.87 | 58.44 |
| VIT_19s0014g00310.t01 | Wine grape | nucleus | 12.84 | 55.13 |
| KRH18859 | Soybean | nucleus | 54.03 | 54.19 |
| KRH16660 | Soybean | nucleus | 54.03 | 52.16 |
| CDY24740 | Canola | nucleus | 8.96 | 46.88 |
| CDX76715 | Canola | nucleus | 8.66 | 45.31 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 43.28 | 42.03 |
| CDY11489 | Canola | nucleus | 10.75 | 40.45 |
| Zm00001d044850_P001 | Maize | nucleus | 32.54 | 39.21 |
| Os08t0494100-02 | Rice | nucleus | 39.4 | 39.17 |
| HORVU4Hr1G003610.5 | Barley | nucleus | 34.93 | 38.36 |
| Os06t0223300-01 | Rice | nucleus | 41.19 | 38.33 |
| TraesCS4B01G023300.1 | Wheat | nucleus | 35.22 | 38.31 |
| CDX76718 | Canola | nucleus | 10.45 | 38.04 |
| TraesCS4D01G021100.1 | Wheat | nucleus | 39.7 | 37.68 |
| KXG19627 | Sorghum | nucleus | 41.19 | 37.0 |
| Zm00001d037212_P001 | Maize | nucleus | 39.1 | 35.6 |
| CDX76713 | Canola | nucleus | 12.84 | 29.25 |
| CDX76717 | Canola | nucleus | 14.93 | 28.25 |
| CDX69305 | Canola | nucleus | 17.01 | 28.08 |
| Solyc05g051830.2.1 | Tomato | nucleus | 27.46 | 23.65 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 43.88 | 23.11 |
| CDY58993 | Canola | nucleus | 25.07 | 22.16 |
| CDY26732 | Canola | nucleus | 24.18 | 21.54 |
| CDY45183 | Canola | nucleus | 23.58 | 20.95 |
| CDY03021 | Canola | nucleus | 23.88 | 20.41 |
| CDX96703 | Canola | nucleus | 25.37 | 19.5 |
| CDX95922 | Canola | mitochondrion | 20.9 | 19.18 |
| CDY60833 | Canola | nucleus | 20.9 | 16.51 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 20.3 | 16.31 |
| CDX83816 | Canola | nucleus | 24.78 | 16.02 |
| CDY17422 | Canola | nucleus | 20.9 | 14.26 |
| CDY26727 | Canola | extracellular | 8.66 | 13.88 |
| CDY64870 | Canola | nucleus | 6.87 | 9.66 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EM44 | EnsemblPlants:CDY00423 | ProteinID:CDY00423 | ProteinID:CDY00423.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00110066001 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEDA04 | SEG:seg |
Description
BnaC07g14030D
Coordinates
chrLK031918:-:881931..884142
Molecular Weight (calculated)
38065.9 Da
IEP (calculated)
4.674
GRAVY (calculated)
-0.582
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDIFARF INLPNQEREN AVFPDQGRRP DIQSKEYLLR
101: ILQQLKTEND IALQITSPAA IKSDVEELEQ EVCRLQQQLQ MAEEELRRYE PDPVRFTSME DYDVCEKQLL DTLTHVVQRR ENLLSGHLPT YEASTMQQSI
201: VGPFLNGVVE GWLPENGPNQ THLFDPSAHS NQLRELSSAM YEPLLQGSSS SSNQNNMSEC HVTNNNGEMF TEWAQAYSSS ALFASINQHG NVGPNMEEMM
301: PVQQGEIPAV TTEAQQAEHE VAAEYKTKVP QLSSQ
101: ILQQLKTEND IALQITSPAA IKSDVEELEQ EVCRLQQQLQ MAEEELRRYE PDPVRFTSME DYDVCEKQLL DTLTHVVQRR ENLLSGHLPT YEASTMQQSI
201: VGPFLNGVVE GWLPENGPNQ THLFDPSAHS NQLRELSSAM YEPLLQGSSS SSNQNNMSEC HVTNNNGEMF TEWAQAYSSS ALFASINQHG NVGPNMEEMM
301: PVQQGEIPAV TTEAQQAEHE VAAEYKTKVP QLSSQ
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ
Arabidopsis Description
AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.