Factsheet for Zm00001d037212_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013792_P001
Zm00001d016791_P001
Zm00001d017614_P003
Zm00001d028217_P001
Zm00001d045231_P002
Zm00001d048082_P001
Zm00001d048894_P001
Zm00001d051465_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	Zm00001d028217_P001	AT2G03710.1	15805477
AT1G77980.1	Zm00001d045231_P002	AT2G03710.1	15805477
AT1G77980.1	Zm00001d048082_P001	AT2G03710.1	15805477
AT1G77980.1	Zm00001d017614_P003	AT2G45650.1	15805477
AT1G77980.1	Zm00001d051465_P002	AT2G45650.1	15805477
AT1G77980.1	Zm00001d013792_P001	AT5G27960.1	15805477
AT1G77980.1	Zm00001d016791_P001	AT5G27960.1	15805477
AT1G77980.1	Zm00001d048894_P001	AT5G27960.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19627	Sorghum	nucleus	77.99	76.94
Zm00001d044850_P001	Maize	nucleus	49.18	65.11
VIT_19s0014g00310.t01	Wine grape	nucleus	11.96	56.41
Os06t0223300-01	Rice	nucleus	50.82	51.94
GSMUA_Achr3P04450_001	Banana	nucleus	45.65	48.7
VIT_07s0031g01140.t01	Wine grape	nucleus	41.85	45.56
AT1G77950.4	Thale cress	nucleus	30.98	45.24
Bra015645.1-P	Field mustard	nucleus	23.91	42.11
CDX87492	Canola	nucleus	26.09	41.92
KRH18859	Soybean	nucleus	38.04	41.92
KRH16660	Soybean	nucleus	39.4	41.79
CDY01295	Canola	nucleus	35.05	41.48
CDX88401	Canola	nucleus	27.17	40.98
CDY41491	Canola	nucleus	36.41	39.65
CDX88402	Canola	nucleus	35.33	39.51
CDX87489	Canola	nucleus	35.33	39.51
Bra015643.1-P	Field mustard	nucleus	35.33	39.51
AT1G77980.1	Thale cress	nucleus	35.6	39.46
Bra012308.1-P	Field mustard	nucleus	35.87	39.4
CDX91664	Canola	nucleus	36.14	39.35
CDY00423	Canola	nucleus	35.6	39.1
AT1G22130.1	Thale cress	nucleus	35.6	39.1
Bra016386.1-P	Field mustard	nucleus	32.88	38.91
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	44.84	25.94
Solyc05g051830.2.1	Tomato	nucleus	23.64	22.36
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	19.84	14.87

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6LVI6	ProteinID:AQK83291.1	ncoils:Coil	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00084348B5	EnsemblPlantsGene:Zm00001d037212	EnsemblPlants:Zm00001d037212_P001	EnsemblPlants:Zm00001d037212_T001	:

Description

MADS-transcription factor 38Putative MADS-box transcription factor family protein

Coordinates

chr6:+:116059964..116066361

Molecular Weight (calculated)

41288.2 Da

IEP (calculated)

4.613

GRAVY (calculated)

-0.424

Length

368 amino acids

Sequence
(BLAST)

001: MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SNRLSHFSGR RRIEDVITRY INLPEHDRGG VVRNREYLMK MLAKLKCEGN
101: IAEQLTPNKE PINSNVEELQ QEIKTYQHQM EVLKEQLRMF EPDLTTLMSM NDFETCEKFL MDTLTCVEER KKYLLCNHVA PFDPSASDMQ QHVDVGMFAL
201: PPAPPHQQEQ QGDDLGGAAS AFGGDVSWFA DGMPTSSIFA ASDPILYFRD QVMFDSTSTM RRDSMVAGVD PGMTSVCQME QQAPSVDWQQ AYTSAEFFST
301: LIPSTPYPLD DQMQNDMAQV LTSPMVPPHE HDKVEVPMSS SNVPTDGDCG TTLAAAQEDG LPGVVNIG

Best Arabidopsis Sequence Match ( AT1G77980.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ

Arabidopsis Description

AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.