Factsheet for Bra015643.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra002611.1-P
Bra004927.1-P
Bra009174.1-P
Bra009176.1-P
Bra009199.1-P
Bra009911.1-P
Bra017376.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra025126.1-P
Bra026543.1-P
Bra028730.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	Bra017376.1-P	AT2G03710.1	15805477
AT1G77980.1	Bra025126.1-P	AT2G03710.1	15805477
AT1G77980.1	Bra026543.1-P	AT2G03710.1	15805477
AT1G77980.1	Bra000392.1-P	AT2G45650.1	15805477
AT1G77980.1	Bra004927.1-P	AT2G45650.1	15805477
AT1G77980.1	Bra009174.1-P	AT5G06500.1	15805477
AT1G77980.1	Bra009176.1-P	AT5G06500.1	15805477
AT1G77980.1	Bra009199.1-P	AT5G06500.1	15805477
AT1G77980.1	Bra028730.1-P	AT5G06500.1	15805477
AT1G77980.1	Bra009911.1-P	AT5G27960.1	15805477
AT1G77980.1	Bra020524.1-P	AT5G27960.1	15805477
AT1G77980.1	Bra020525.1-P	AT5G27960.1	15805477
AT1G77980.1	Bra020550.1-P	AT5G27960.1	15805477
AT1G77980.1	Bra020552.1-P	AT5G27960.1	15805477
AT1G77980.1	Bra002611.1-P	AT5G58890.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87489	Canola	nucleus	100.0	100.0
AT1G77980.1	Thale cress	nucleus	84.5	83.73
Bra012308.1-P	Field mustard	nucleus	74.47	73.13
Bra016386.1-P	Field mustard	nucleus	67.48	71.38
TraesCS4A01G290700.1	Wheat	nucleus	29.48	62.99
Bra015645.1-P	Field mustard	nucleus	37.99	59.81
VIT_19s0014g00310.t01	Wine grape	nucleus	13.37	56.41
KRH18859	Soybean	nucleus	52.58	51.8
KRH16660	Soybean	nucleus	52.28	49.57
GSMUA_Achr3P04450_001	Banana	nucleus	41.03	39.13
Os06t0223300-01	Rice	nucleus	42.55	38.89
Os08t0494100-02	Rice	nucleus	39.82	38.87
Zm00001d044850_P001	Maize	nucleus	32.52	38.49
HORVU4Hr1G003610.5	Barley	nucleus	34.95	37.7
TraesCS4D01G021100.1	Wheat	nucleus	40.43	37.68
TraesCS4B01G023300.1	Wheat	nucleus	34.65	37.01
KXG19627	Sorghum	nucleus	41.03	36.19
Zm00001d037212_P001	Maize	nucleus	39.51	35.33
Bra011763.1-P	Field mustard	mitochondrion	16.72	31.43
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	42.86	22.17
Solyc05g051830.2.1	Tomato	nucleus	25.84	21.85
Bra031049.1-P	Field mustard	nucleus	24.92	21.47
Bra016544.1-P	Field mustard	nucleus	19.15	20.59
Bra004393.1-P	Field mustard	nucleus	20.97	19.77
Bra025685.1-P	Field mustard	nucleus	22.49	19.53
Bra024792.1-P	Field mustard	nucleus	22.19	19.36
Bra017404.1-P	Field mustard	nucleus	20.97	18.21

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra015643	EnsemblPlants:Bra015643.1	EnsemblPlants:Bra015643.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009555	GO:GO:0009653	GO:GO:0009856	GO:GO:0009987	GO:GO:0010152	GO:GO:0016043
GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0045944	GO:GO:0046983	GO:GO:0080092
InterPro:IPR002100	InterPro:IPR036879	UniProt:M4DGL8	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002541B74	SEG:seg	:	:

Description

AT1G77980 (E=2e-149) AGL66 | AGL66 (AGAMOUS-LIKE 66); transcription factor

Coordinates

chrA07:-:21581124..21583190

Molecular Weight (calculated)

37596.9 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.705

Length

329 amino acids

Sequence
(BLAST)

001: MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRVEDVFTRF INLPDQEREN ALTFTDQSRR PDFQSKEYLL
101: RTLQQLKTEN DIALQLTNPS AINSDVQELE QEVYRLQQQL HMAEEELRKY EPDPSRFTTM EEYEASEKQL IETLTHVTQR REHILSDQLS SYETSAMQHQ
201: NMGGPFVNDV AGGWLAENGP IQTQLFDASA NSAIYETLLQ GSSSSSNQNN NMSECNVTNH NGDMFQEWAQ AYTSTTGLNP SALFPPMQHQ HGVVNPNIKE
301: SDIPVITREA PADHEVSDYD IRMPQLSSQ

Best Arabidopsis Sequence Match ( AT1G77980.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ

Arabidopsis Description

AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.