Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra015643.1-P | |
| Bra020600.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06500.1 | Bra020600.1-P | AT1G48150.1 | 15805477 |
| AT5G06500.1 | Bra015643.1-P | AT1G77980.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64727 | Canola | mitochondrion, nucleus | 95.29 | 95.29 |
| Bra009176.1-P | Field mustard | mitochondrion | 63.87 | 63.54 |
| Bra009199.1-P | Field mustard | nucleus | 65.44 | 61.88 |
| Bra028730.1-P | Field mustard | nucleus | 46.07 | 34.92 |
| AT5G06500.1 | Thale cress | nucleus | 40.84 | 32.23 |
| Bra034809.1-P | Field mustard | nucleus | 25.65 | 13.88 |
| KRH68023 | Soybean | nucleus | 23.04 | 10.95 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EnsemblPlantsGene:Bra009174 | EnsemblPlants:Bra009174.1 | EnsemblPlants:Bra009174.1-P | GO:GO:0000982 |
| GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M4CY77 | InterPro:MADS_SRF-like |
| PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002544FE1 | SEG:seg | : | : |
Description
AT5G06500 (E=2e-026) AGL96 | AGL96 (AGAMOUS-LIKE 96); DNA binding / transcription factor
Coordinates
chrA10:-:15531010..15531585
Molecular Weight (calculated)
22011.3 Da
IEP (calculated)
4.852
GRAVY (calculated)
-0.752
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPKVKLAW VEERKRRATV CQRRMKELIQ MAEELTIVCD MSACLVFYNR KNGKLVAWPS LEEAQSLIDC YNALPETERN MKADDEESSF IKTITKEIEK
101: KLGLSRKAIE ELKMDNLMLQ IKNGSRMIAD LSQTEIEKLK SYASEKVVYY DRELRKQHPN TSGNEPFLED DDGEMKIYEG ESSESDGADN A
101: KLGLSRKAIE ELKMDNLMLQ IKNGSRMIAD LSQTEIEKLK SYASEKVVYY DRELRKQHPN TSGNEPFLED DDGEMKIYEG ESSESDGADN A
001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
Arabidopsis Description
AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.