Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009176.1-P | Field mustard | mitochondrion | 33.88 | 42.71 |
| CDY64730 | Canola | mitochondrion | 33.88 | 42.71 |
| Bra009199.1-P | Field mustard | nucleus | 35.12 | 42.08 |
| CDX70099 | Canola | nucleus | 35.12 | 42.08 |
| CDY65795 | Canola | cytosol | 26.03 | 41.72 |
| Bra009174.1-P | Field mustard | nucleus | 32.23 | 40.84 |
| CDY67123 | Canola | nucleus | 32.23 | 40.84 |
| CDY04990 | Canola | nucleus | 42.15 | 40.48 |
| CDY64727 | Canola | mitochondrion, nucleus | 31.82 | 40.31 |
| Bra028730.1-P | Field mustard | nucleus | 41.74 | 40.08 |
| CDY14080 | Canola | nucleus | 41.74 | 40.08 |
| CDX98929 | Canola | mitochondrion, nucleus | 16.94 | 32.03 |
| AT2G15660.1 | Thale cress | cytosol | 21.9 | 21.2 |
| AT2G40210.1 | Thale cress | nucleus | 30.17 | 19.68 |
| AT2G26880.1 | Thale cress | cytosol | 14.46 | 19.02 |
| KRH68023 | Soybean | nucleus | 19.83 | 11.94 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:830538 | ProteinID:AED91024.1 | Symbol:AGL96 | ArrayExpress:AT5G06500 |
| EnsemblPlantsGene:AT5G06500 | RefSeq:AT5G06500 | TAIR:AT5G06500 | RefSeq:AT5G06500-TAIR-G | EnsemblPlants:AT5G06500.1 | TAIR:AT5G06500.1 |
| ProteinID:BAB11399.1 | ncoils:Coil | EMBL:DQ056672 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_196268.1 | PFAM:PF00319 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0009009 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF340 |
| UniProt:Q9FG20 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A6BBF |
| SEG:seg | : | : | : | : | : |
Description
AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
Coordinates
chr5:+:1982444..1983205
Molecular Weight (calculated)
27299.5 Da
IEP (calculated)
4.779
GRAVY (calculated)
-0.543
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.