CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87489
CDX88402
CDY25046
CDY50584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06500.1	CDY25046	AT1G48150.1	15805477
AT5G06500.1	CDY50584	AT1G48150.1	15805477
AT5G06500.1	CDX87489	AT1G77980.1	15805477
AT5G06500.1	CDX88402	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028730.1-P	Field mustard	nucleus	99.6	99.6
CDY14080	Canola	nucleus	93.25	93.25
CDX70099	Canola	nucleus	45.63	56.93
CDY64730	Canola	mitochondrion	38.89	51.04
CDY65795	Canola	cytosol	29.76	49.67
CDY67123	Canola	nucleus	36.51	48.17
CDY64727	Canola	mitochondrion, nucleus	35.71	47.12
AT5G06500.1	Thale cress	nucleus	40.48	42.15
CDX98929	Canola	mitochondrion, nucleus	21.03	41.41
CDY01060	Canola	nucleus	26.98	19.71
CDY08493	Canola	nucleus	27.38	19.66
KRH68023	Soybean	nucleus	21.83	13.68

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078ESQ4	EnsemblPlants:CDY04990	ProteinID:CDY04990	ProteinID:CDY04990.1
ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00119723001	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF153	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EE5F06

Description

BnaAnng01720D

Coordinates

chrLK031958:+:964971..965729

Molecular Weight (calculated)

28850.2 Da

IEP (calculated)

5.481

GRAVY (calculated)

-0.660

Length

252 amino acids

Sequence
(BLAST)

001: MAKKKMKLTR IENPRARNTA FKRRTQGLIK KAEELTILCG LDACLTFFNL DDAKLVAWPS KEVAESLVDR FYSLPSYERN MKAETQESFL KTNIKKIQKK
101: LANCRVRVAE LEMEHLLFDL ENGRSLDDFS QSEIESLRSY TNKRIMGLNK DLGYSEHAYT SVNEPFPGVD QTPRVLDVAL EQAHCSNLMG SRCTYLMDKW
201: FFDDPKVQED GDVTHLPKLV HRFDLNMEPS DDEEDMETYK GESGKSGGAS DA

Best Arabidopsis Sequence Match ( AT5G06500.1 )
(BLAST)

001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE

Arabidopsis Description

AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.