Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06500.1 | CDY25046 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDY50584 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDX87489 | AT1G77980.1 | 15805477 |
| AT5G06500.1 | CDX88402 | AT1G77980.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65795 | Canola | cytosol | 76.44 | 96.69 |
| CDY64727 | Canola | mitochondrion, nucleus | 91.62 | 91.62 |
| CDY64730 | Canola | mitochondrion | 64.92 | 64.58 |
| CDX70099 | Canola | nucleus | 67.54 | 63.86 |
| CDX98929 | Canola | mitochondrion, nucleus | 28.8 | 42.97 |
| CDY14080 | Canola | nucleus | 48.69 | 36.9 |
| CDY04990 | Canola | nucleus | 48.17 | 36.51 |
| AT5G06500.1 | Thale cress | nucleus | 40.84 | 32.23 |
| CDY01060 | Canola | nucleus | 25.65 | 14.2 |
| CDY08493 | Canola | nucleus | 25.13 | 13.68 |
| KRH68023 | Soybean | nucleus | 21.99 | 10.45 |
Protein Annotations
| MapMan:15.5.14 | GO:A0A078JHP9 | UniProt:A0A078JHP9 | EnsemblPlants:CDY67123 | ProteinID:CDY67123 | ProteinID:CDY67123.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00059591001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF3D9B |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng23620DBnaAnng23620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHP9]
Coordinates
chrLK035786:-:10593..11168
Molecular Weight (calculated)
21964.2 Da
IEP (calculated)
5.090
GRAVY (calculated)
-0.775
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPKVKLAW VEERKRRATV CQRRIKEVIQ MAEELTIVCD MSACLVFYNR KSGKLVAWPS LEEAQSLIDC YNALPETERN MKADDEESSF IKTITKEIEK
101: KLELSRKAVE ELKMDNLMLQ IKNGSRMIAD LSQTEIEKLK SYASKKIAYY DRELHKKHPN TSGNEPFLED DDGEMKTYEG ESSESDGADN A
101: KLELSRKAVE ELKMDNLMLQ IKNGSRMIAD LSQTEIEKLK SYASKKIAYY DRELHKKHPN TSGNEPFLED DDGEMKTYEG ESSESDGADN A
001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
Arabidopsis Description
AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.