CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87489
CDX88402
CDY25046
CDY50584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06500.1	CDY25046	AT1G48150.1	15805477
AT5G06500.1	CDY50584	AT1G48150.1	15805477
AT5G06500.1	CDX87489	AT1G77980.1	15805477
AT5G06500.1	CDX88402	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009176.1-P	Field mustard	mitochondrion	100.0	100.0
CDY65795	Canola	cytosol	55.21	70.2
CDX70099	Canola	nucleus	73.44	69.8
CDY64727	Canola	mitochondrion, nucleus	65.1	65.44
CDY67123	Canola	nucleus	64.58	64.92
CDX98929	Canola	mitochondrion, nucleus	33.85	50.78
CDY14080	Canola	nucleus	51.56	39.29
CDY04990	Canola	nucleus	51.04	38.89
AT5G06500.1	Thale cress	nucleus	42.71	33.88
CDY01060	Canola	nucleus	28.12	15.65
CDY08493	Canola	nucleus	27.08	14.81
KRH68023	Soybean	nucleus	26.56	12.69

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078JE45	UniProt:A0A078JE45	EnsemblPlants:CDY64730	ProteinID:CDY64730
ProteinID:CDY64730.1	ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00042625001
InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF153	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002544FE3	SEG:seg	:	:	:	:

Description

BnaA10g30620DBnaA10g30620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE45]

Coordinates

chrLK034533:-:19337..19915

Molecular Weight (calculated)

21993.9 Da

IEP (calculated)

4.702

GRAVY (calculated)

-0.848

Length

192 amino acids

Sequence
(BLAST)

001: MAPKLKFALI EDRKKRQATC QRRMKGLMKK AEELTILSGA SACLTFFNRD DGKLVVWPSQ EKAQSLIDRF NALSETERNE NAYDPESYIE ANIKKMEKRL
101: EHSRKAVEEL EMDHLMLQIQ NGRMLADLSQ TEVEKLKSYA SKKITCLERE LRTPHPNTSV EPFLEDEGFL NDDEDMETSE GESSESDGAD NA

Best Arabidopsis Sequence Match ( AT5G06500.1 )
(BLAST)

001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE

Arabidopsis Description

AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.