Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06500.1 | CDY25046 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDY50584 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDX87489 | AT1G77980.1 | 15805477 |
| AT5G06500.1 | CDX88402 | AT1G77980.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67123 | Canola | nucleus | 96.69 | 76.44 |
| CDY64727 | Canola | mitochondrion, nucleus | 93.38 | 73.82 |
| CDY64730 | Canola | mitochondrion | 70.2 | 55.21 |
| CDX70099 | Canola | nucleus | 70.2 | 52.48 |
| CDY14080 | Canola | nucleus | 50.99 | 30.56 |
| CDY04990 | Canola | nucleus | 49.67 | 29.76 |
| AT5G06500.1 | Thale cress | nucleus | 41.72 | 26.03 |
| CDX98929 | Canola | mitochondrion, nucleus | 20.53 | 24.22 |
| CDY01060 | Canola | nucleus | 24.5 | 10.72 |
| CDY08493 | Canola | nucleus | 24.5 | 10.54 |
| KRH68023 | Soybean | nucleus | 20.53 | 7.71 |
Protein Annotations
| EnsemblPlants:CDY65795 | EnsemblPlantsGene:GSBRNA2T00048254001 | ncoils:Coil | ProteinID:CDY65795 | ProteinID:CDY65795.1 | UniParc:UPI0004EE1542 |
| UniProt:A0A078JH58 | MapMan:35.2 | : | : | : | : |
Description
BnaAnng21100DBnaAnng21100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JH58]
Coordinates
chrLK034956:-:18309..18764
Molecular Weight (calculated)
17301.2 Da
IEP (calculated)
4.445
GRAVY (calculated)
-0.917
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MSACLVFYNR KNGKLVAWPS LEEAQSLIDC YNALPETERN MKADDEESSF IKTITKDIEK KLELSRKAVE ELKMDNLMLQ IKNGSRMIAD LSQTEIEKLK
101: SYASKKIEYY DRELRKQHPN TSGNEPFLED DDGEMKTYEG ESSESDGADN A
101: SYASKKIEYY DRELRKQHPN TSGNEPFLED DDGEMKTYEG ESSESDGADN A
001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
Arabidopsis Description
AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.