Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06500.1 | CDY25046 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDY50584 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDX87489 | AT1G77980.1 | 15805477 |
| AT5G06500.1 | CDX88402 | AT1G77980.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04990 | Canola | nucleus | 93.25 | 93.25 |
| CDX70099 | Canola | nucleus | 46.43 | 57.92 |
| CDY64730 | Canola | mitochondrion | 39.29 | 51.56 |
| CDY65795 | Canola | cytosol | 30.56 | 50.99 |
| CDY67123 | Canola | nucleus | 36.9 | 48.69 |
| CDY64727 | Canola | mitochondrion, nucleus | 36.11 | 47.64 |
| AT5G06500.1 | Thale cress | nucleus | 40.08 | 41.74 |
| CDX98929 | Canola | mitochondrion, nucleus | 20.24 | 39.84 |
| CDY01060 | Canola | nucleus | 26.98 | 19.71 |
| CDY08493 | Canola | nucleus | 27.38 | 19.66 |
| KRH68023 | Soybean | nucleus | 21.83 | 13.68 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FI32 | UniProt:A0A078FI32 | EnsemblPlants:CDY14080 | ProteinID:CDY14080 |
| ProteinID:CDY14080.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00078618001 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF355 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0004EE3613 | : | : | : | : | : |
Description
BnaC02g01970DBnaC02g01970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FI32]
Coordinates
chrLK032040:-:338340..339098
Molecular Weight (calculated)
28919.3 Da
IEP (calculated)
5.284
GRAVY (calculated)
-0.705
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEKMKLTR IENQRARNTA FKRRTQGLIK KAKELTILCG LDACLTFFNL DDAKLVAWPS KEVAESLMDR FYSLPSYERN MKAETQESFL KTNIKKIQKK
101: LADCRVSVAE LEMEHLMFDL ENGRSLDDFS QSEIESLRSY TNKKIMGLNK DLGYPEHAYT SVNEPFPGVD QTPKVLDVAF EREHCSNLMG SRCIYLMDKW
201: FFDDPKVQED GNGNHLPKLV HRFDLNMEPS DDEEDMETYK GESGKSGGAS DA
101: LADCRVSVAE LEMEHLMFDL ENGRSLDDFS QSEIESLRSY TNKKIMGLNK DLGYPEHAYT SVNEPFPGVD QTPKVLDVAF EREHCSNLMG SRCIYLMDKW
201: FFDDPKVQED GNGNHLPKLV HRFDLNMEPS DDEEDMETYK GESGKSGGAS DA
001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
Arabidopsis Description
AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.