CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06500.1	KRH16660	AT1G77980.1	15805477
AT5G06500.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64730	Canola	mitochondrion	12.69	26.56
Bra009176.1-P	Field mustard	mitochondrion	12.69	26.56
CDX70099	Canola	nucleus	13.18	26.24
Bra009199.1-P	Field mustard	nucleus	12.94	25.74
CDY64727	Canola	mitochondrion, nucleus	10.95	23.04
Bra009174.1-P	Field mustard	nucleus	10.95	23.04
CDY67123	Canola	nucleus	10.45	21.99
CDX98929	Canola	mitochondrion, nucleus	6.97	21.88
Bra028730.1-P	Field mustard	nucleus	13.68	21.83
CDY04990	Canola	nucleus	13.68	21.83
CDY14080	Canola	nucleus	13.68	21.83
CDY65795	Canola	cytosol	7.71	20.53
AT2G15660.1	Thale cress	cytosol	12.69	20.4
AT5G06500.1	Thale cress	nucleus	11.94	19.83
AT2G26880.1	Thale cress	cytosol	8.46	18.48
AT2G40210.1	Thale cress	nucleus	16.92	18.33
CDY01060	Canola	nucleus	15.42	17.97
CDY08493	Canola	nucleus	15.42	17.66
Bra034809.1-P	Field mustard	nucleus	15.17	17.28

Protein Annotations

EntrezGene:106798339	MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A0R0KM60	EMBL:ACUP02002097	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G203300	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
EnsemblPlants:KRH68023	ProteinID:KRH68023	ProteinID:KRH68023.1	InterPro:MADS_SRF-like	PFAM:PF00319	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF355	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00023C0FCB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:41166893..41168712

Molecular Weight (calculated)

44631.0 Da

IEP (calculated)

4.442

GRAVY (calculated)

-0.642

Length

402 amino acids

Sequence
(BLAST)

001: MPRRKKITQK PIEDFVKRKA CYRKRREILL KMVEDLTTLC DIDACAFILG PGDDVPNVWP SHDKAKEMLD KFENAPLSTR LKKNITPQVY IERANNKVEN
101: QLVELRKKND EIDMSDLMHQ IHDDGRSLSD FDASDISRLL SYVEEKLKGV RVKTGFSEQQ LPPKPPTPQV SCPLQNDKID SWDNIDEQVL QQQSFIDDLK
201: EDGKINSGFD NNLGSNIGLP PPNTHVGDVD FEPFNQGYVD MMLPPENFGG LANESGLGFG VLPRDYFIGS NGNNDSELLY GSYYSEIGGN DIWSSYGNFG
301: GKIVGSDDVM LPFNNNSQGN INETCLGIGQ HDENQGGSIN NVGLWNHQIT LGASNDGVAL ERSNPNFVGT TSGENLNLGF PSHANLASSG ERSDIELQEF
401: SP

Best Arabidopsis Sequence Match ( AT5G06500.1 )
(BLAST)

001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE

Arabidopsis Description

AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.