Factsheet for Bra034809.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra032347.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40210.1	Bra032347.1-P	AT1G29962.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08493	Canola	nucleus	93.48	94.02
CDY01060	Canola	nucleus	86.12	88.12
AT2G15660.1	Thale cress	cytosol	32.01	45.2
AT2G26880.1	Thale cress	cytosol	20.68	39.67
AT2G40210.1	Thale cress	nucleus	35.41	33.69
Bra009199.1-P	Field mustard	nucleus	16.43	28.71
Bra028730.1-P	Field mustard	nucleus	19.83	27.78
Bra009176.1-P	Field mustard	mitochondrion	15.01	27.6
Bra009174.1-P	Field mustard	nucleus	13.88	25.65
KRH68023	Soybean	nucleus	17.28	15.17

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra034809	EnsemblPlants:Bra034809.1	EnsemblPlants:Bra034809.1-P	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4F163	InterPro:MADS_SRF-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF355	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000254755A	SEG:seg	:

Description

AT2G40210 (E=1e-064) AGL48 | AGL48 (AGAMOUS-LIKE 48); transcription factor

Coordinates

chrA05:+:21519204..21520265

Molecular Weight (calculated)

40271.0 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.685

Length

353 amino acids

Sequence
(BLAST)

001: MTKKVKLALM ENEKSRAITL KKRRSGLVKK VKEISTLCDV KACLIMFSPK EAEPMVWPSA EAARNLLKDF DALPAFTKKK NETSLESYLK EKTWKVHESL
101: RKTQKENMEC MMDQLKVQLS SFPKLDDLDV KEIYSLISFS KDAIMHLRKK VGSVQHCPLR DPPVYPFEEQ VKEFRTTTGG GQEYERARKT YEEMNMASIG
201: ASKEKQTYYL MDEWIFPSLK QPSPQTQQQI MMKMASYNNN NTPDPGCYQS YHPYQESSSN GDHNMEMAPA FPPALAFPDF LGPVSHPHPY DFMSHEERSN
301: IDNNNNANNI GFWPETPPPA NGATAEEGIV GASSFDISYL MDYPGINNTF LDL

Best Arabidopsis Sequence Match ( AT2G40210.1 )
(BLAST)

001: MTRKKVKLVW IENDKSRATS LQKMRVGLLK KVKELTILCA VRAIVIIFSP DKVGPLVWPS PQATHGLLDE FFALPKSVQK KKESNVESYL KEKTHKFQEQ
101: LKKSKKKNKE HVIDELMMQL QSGREIADLN QSEMYALLSF SRDTILLCRK KLAFMQFPPL RDPPVFPFEI QVEEFKTTTN DGFVGGGQDN KRAGRTDEAT
201: RFINTDIFKQ SKSYYFFDEW VFPPSPPKYE IPQQMENGNP NPKSYRLYQG SSSNGNPHLE MDPFRLQMMT SQGLAGSVSQ PLQHHSMINN PTMAMNQPSQ
301: DPFDYMRSEL GINEGININN SQFYMSNNTI TANDGVRQEP YPNVTTAGEN NGDATTSNTN MVWPGFNNHH F

Arabidopsis Description

AGL48AGL48 [Source:UniProtKB/TrEMBL;Acc:A0A178VQF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.