Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra015643.1-P | |
| Bra020600.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06500.1 | Bra020600.1-P | AT1G48150.1 | 15805477 |
| AT5G06500.1 | Bra015643.1-P | AT1G77980.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70099 | Canola | nucleus | 99.01 | 99.01 |
| Bra009176.1-P | Field mustard | mitochondrion | 68.81 | 72.4 |
| Bra009174.1-P | Field mustard | nucleus | 61.88 | 65.44 |
| Bra028730.1-P | Field mustard | nucleus | 56.44 | 45.24 |
| AT5G06500.1 | Thale cress | nucleus | 42.08 | 35.12 |
| Bra034809.1-P | Field mustard | nucleus | 28.71 | 16.43 |
| KRH68023 | Soybean | nucleus | 25.74 | 12.94 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EnsemblPlantsGene:Bra009199 | EnsemblPlants:Bra009199.1 | EnsemblPlants:Bra009199.1-P | ncoils:Coil |
| GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M4CYA2 |
| InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002544FFA | SEG:seg |
Description
AT5G06500 (E=1e-034) AGL96 | AGL96 (AGAMOUS-LIKE 96); DNA binding / transcription factor
Coordinates
chrA10:+:15614345..15614953
Molecular Weight (calculated)
23131.6 Da
IEP (calculated)
4.772
GRAVY (calculated)
-0.715
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRPKLKIAW IEDRKKRNIA CQKRMKGLMK MAEELTILSD TKACLTFFNR DDGKLVAWPS QEEAESLIDR FYALPEIQRN MYADDQESYI KTITKKIEKK
101: LEHSQKVVEE LEMDHLMFQI QNGRMLADLS QTEVEKLMSY ASKKITVLTR ELGAEHPYTS VDEPFLGDEI PKATDVAPEG DDEEYMKANE GESSKSGGAD
201: NA
101: LEHSQKVVEE LEMDHLMFQI QNGRMLADLS QTEVEKLMSY ASKKITVLTR ELGAEHPYTS VDEPFLGDEI PKATDVAPEG DDEEYMKANE GESSKSGGAD
201: NA
001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
Arabidopsis Description
AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.