Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06500.1 | CDY25046 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDY50584 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDX87489 | AT1G77980.1 | 15805477 |
| AT5G06500.1 | CDX88402 | AT1G77980.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009199.1-P | Field mustard | nucleus | 99.01 | 99.01 |
| CDY64730 | Canola | mitochondrion | 69.8 | 73.44 |
| CDY65795 | Canola | cytosol | 52.48 | 70.2 |
| CDY67123 | Canola | nucleus | 63.86 | 67.54 |
| CDY64727 | Canola | mitochondrion, nucleus | 62.38 | 65.97 |
| CDX98929 | Canola | mitochondrion, nucleus | 40.59 | 64.06 |
| CDY14080 | Canola | nucleus | 57.92 | 46.43 |
| CDY04990 | Canola | nucleus | 56.93 | 45.63 |
| AT5G06500.1 | Thale cress | nucleus | 42.08 | 35.12 |
| CDY01060 | Canola | nucleus | 28.71 | 16.81 |
| CDY08493 | Canola | nucleus | 28.22 | 16.24 |
| KRH68023 | Soybean | nucleus | 26.24 | 13.18 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078C1M6 | EnsemblPlants:CDX70099 | ProteinID:CDX70099 | ProteinID:CDX70099.1 |
| ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00136207001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE41E2 |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g24480D
Coordinates
chrLK031790:-:3084906..3085514
Molecular Weight (calculated)
23125.6 Da
IEP (calculated)
4.862
GRAVY (calculated)
-0.715
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRPKLKIAW IEDRKKRNIA CQKRMKGLMK MAEELTILSD TKACLTFFNR DDGKLVAWPS QEEAESLIDR FYALPEIQRN MYADDQESYI KTITKKIEKK
101: LEHSRKVVEE LEMDHLMLQI QNGRMLADLS QTEVEKLMSY ASKKITVLTR ELGAEHPYTS VDEPFLGDEI PKATDVAPEG DDEEYMKANE GESSKSGGAD
201: NA
101: LEHSRKVVEE LEMDHLMLQI QNGRMLADLS QTEVEKLMSY ASKKITVLTR ELGAEHPYTS VDEPFLGDEI PKATDVAPEG DDEEYMKANE GESSKSGGAD
201: NA
001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
Arabidopsis Description
AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.