CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX99867
CDY26304

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40210.1	CDX99867	AT1G29962.1	15805477
AT2G40210.1	CDY26304	AT1G29962.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034809.1-P	Field mustard	nucleus	94.02	93.48
CDY01060	Canola	nucleus	86.89	88.41
AT2G15660.1	Thale cress	cytosol	31.34	44.0
AT2G26880.1	Thale cress	cytosol	21.08	40.22
AT2G40210.1	Thale cress	nucleus	35.9	33.96
CDX70099	Canola	nucleus	16.24	28.22
CDY04990	Canola	nucleus	19.66	27.38
CDY14080	Canola	nucleus	19.66	27.38
CDY64730	Canola	mitochondrion	14.81	27.08
CDY64727	Canola	mitochondrion, nucleus	14.24	26.18
CDY67123	Canola	nucleus	13.68	25.13
CDY65795	Canola	cytosol	10.54	24.5
CDX98929	Canola	mitochondrion, nucleus	8.55	23.44
KRH68023	Soybean	nucleus	17.66	15.42

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078F9N5	UniProt:A0A078F9N5	EnsemblPlants:CDY08493	ProteinID:CDY08493
ProteinID:CDY08493.1	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00000265001	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF355	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EEAE1D
SEG:seg	:	:	:	:	:

Description

BnaA05g27290DBnaA05g27290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9N5]

Coordinates

chrLK031986:+:411581..412636

Molecular Weight (calculated)

40208.0 Da

IEP (calculated)

8.629

GRAVY (calculated)

-0.717

Length

351 amino acids

Sequence
(BLAST)

001: MTKKVKLAFM KNEKSRAITL KKRRSGLVKK VKEISTLCDV KACLIMFSPK EAEPMVWPSA EAARNLLKDF DALPAFTKKK NETSLESYLK EKTWKVHESL
101: RKKTQKENME CMMDQLKVQL SSFPKLDDLD VKEIYSLISL SKDAIMHLRK KIGSVQHCPL RDPPVYPFEE QVKEFRTTTG GGQEYERARK TYEEVNMASI
201: GASKEKQTYY LMDEWIFPSL KQPSPQTHQQ IMMNMASYNN NTLNPRCYQS YHPYQGSNSN GNHNMEMAPA FPPALAFPDF VGPVSDPHPY DFMRHEERSN
301: IDNNNNANNI GFWPETPPPA NGATAEEGIV GASSFDISYL MDYPGIKNHH F

Best Arabidopsis Sequence Match ( AT2G40210.1 )
(BLAST)

001: MTRKKVKLVW IENDKSRATS LQKMRVGLLK KVKELTILCA VRAIVIIFSP DKVGPLVWPS PQATHGLLDE FFALPKSVQK KKESNVESYL KEKTHKFQEQ
101: LKKSKKKNKE HVIDELMMQL QSGREIADLN QSEMYALLSF SRDTILLCRK KLAFMQFPPL RDPPVFPFEI QVEEFKTTTN DGFVGGGQDN KRAGRTDEAT
201: RFINTDIFKQ SKSYYFFDEW VFPPSPPKYE IPQQMENGNP NPKSYRLYQG SSSNGNPHLE MDPFRLQMMT SQGLAGSVSQ PLQHHSMINN PTMAMNQPSQ
301: DPFDYMRSEL GINEGININN SQFYMSNNTI TANDGVRQEP YPNVTTAGEN NGDATTSNTN MVWPGFNNHH F

Arabidopsis Description

AGL48AGL48 [Source:UniProtKB/TrEMBL;Acc:A0A178VQF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.