Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G26880.1 | Thale cress | cytosol | 24.26 | 48.91 |
| AT2G15660.1 | Thale cress | cytosol | 26.95 | 40.0 |
| CDY01060 | Canola | nucleus | 33.69 | 36.23 |
| CDY08493 | Canola | nucleus | 33.96 | 35.9 |
| Bra034809.1-P | Field mustard | nucleus | 33.69 | 35.41 |
| AT5G06500.1 | Thale cress | nucleus | 19.68 | 30.17 |
| KRH68023 | Soybean | nucleus | 18.33 | 16.92 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:818613 | UniProt:A0A178VQF2 | ProteinID:AAD25936.1 | ProteinID:AEC09797.1 |
| Symbol:AGL48 | ArrayExpress:AT2G40210 | EnsemblPlantsGene:AT2G40210 | RefSeq:AT2G40210 | TAIR:AT2G40210 | RefSeq:AT2G40210-TAIR-G |
| EnsemblPlants:AT2G40210.1 | TAIR:AT2G40210.1 | Unigene:At.64970 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_181550.1 | ProteinID:OAP07621.1 | PFAM:PF00319 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0009009 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF184 | UniProt:Q9XEF1 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00000A0E5D | SEG:seg | : | : | : | : |
Description
AGL48AGL48 [Source:UniProtKB/TrEMBL;Acc:A0A178VQF2]
Coordinates
chr2:-:16793213..16794328
Molecular Weight (calculated)
42416.6 Da
IEP (calculated)
9.327
GRAVY (calculated)
-0.688
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRKKVKLVW IENDKSRATS LQKMRVGLLK KVKELTILCA VRAIVIIFSP DKVGPLVWPS PQATHGLLDE FFALPKSVQK KKESNVESYL KEKTHKFQEQ
101: LKKSKKKNKE HVIDELMMQL QSGREIADLN QSEMYALLSF SRDTILLCRK KLAFMQFPPL RDPPVFPFEI QVEEFKTTTN DGFVGGGQDN KRAGRTDEAT
201: RFINTDIFKQ SKSYYFFDEW VFPPSPPKYE IPQQMENGNP NPKSYRLYQG SSSNGNPHLE MDPFRLQMMT SQGLAGSVSQ PLQHHSMINN PTMAMNQPSQ
301: DPFDYMRSEL GINEGININN SQFYMSNNTI TANDGVRQEP YPNVTTAGEN NGDATTSNTN MVWPGFNNHH F
101: LKKSKKKNKE HVIDELMMQL QSGREIADLN QSEMYALLSF SRDTILLCRK KLAFMQFPPL RDPPVFPFEI QVEEFKTTTN DGFVGGGQDN KRAGRTDEAT
201: RFINTDIFKQ SKSYYFFDEW VFPPSPPKYE IPQQMENGNP NPKSYRLYQG SSSNGNPHLE MDPFRLQMMT SQGLAGSVSQ PLQHHSMINN PTMAMNQPSQ
301: DPFDYMRSEL GINEGININN SQFYMSNNTI TANDGVRQEP YPNVTTAGEN NGDATTSNTN MVWPGFNNHH F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.