Factsheet for Bra024792.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45183	Canola	nucleus	99.73	99.73
CDY03021	Canola	nucleus	96.55	92.86
AT2G03060.2	Thale cress	nucleus	81.7	79.79
Bra017404.1-P	Field mustard	nucleus	79.31	78.89
Bra004393.1-P	Field mustard	nucleus	40.05	43.27
GSMUA_Achr3P24170_001	Banana	nucleus	38.73	40.9
GSMUA_Achr11P...	Banana	nucleus	24.14	39.91
GSMUA_Achr2P01740_001	Banana	nucleus	35.54	39.3
KXG29049	Sorghum	nucleus	38.46	38.26
Bra031049.1-P	Field mustard	nucleus	37.67	37.17
TraesCS4B01G150200.1	Wheat	nucleus	37.93	36.76
TraesCS4D01G147000.1	Wheat	nucleus	37.67	36.5
HORVU4Hr1G032440.7	Barley	nucleus	37.4	36.43
TraesCS4A01G169000.1	Wheat	nucleus	37.4	36.43
Os11t0658700-01	Rice	nucleus	37.4	35.97
Bra016544.1-P	Field mustard	nucleus	28.91	35.62
Bra025685.1-P	Field mustard	nucleus	34.75	34.56
Bra011763.1-P	Field mustard	mitochondrion	13.79	29.71
Bra015645.1-P	Field mustard	nucleus	15.92	28.71
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	33.16	25.46
Bra016386.1-P	Field mustard	nucleus	19.63	23.79
Bra012308.1-P	Field mustard	nucleus	20.69	23.28
Bra015643.1-P	Field mustard	nucleus	19.36	22.19

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra024792	EnsemblPlants:Bra024792.1	EnsemblPlants:Bra024792.1-P	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4E7N6	InterPro:MADS_SRF-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF169	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000253F868	SEG:seg	:

Description

AT2G03060 (E=1e-161) AGL30 | DNA binding / transcription factor

Coordinates

chrA06:-:23467005..23469076

Molecular Weight (calculated)

42651.5 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.600

Length

377 amino acids

Sequence
(BLAST)

001: MGRVKLKIKK LENTAGRQAT FAKRKNGILK KASELSVLCD IDLVLLMFSP TGKPSLCCAQ RSSIEEVIAK FSQVTPEERA KRKIEGLETL KKTFQKLDHH
101: VNIRDFISSS NPTTEDLSTR ARILQDRISE IHGRLRYWTE PDKINNVEDL GQLEISIRQS LDQLRAHKEH FGQQQHAMQI ENANFVKDWS TSLLQDGIQI
201: PLEQQLQSMP WILNTNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEITISG QETSFLDELT NGHLKPQTIT QQQFTDNSVI PYIPSLQNDL
301: NHHQTLPLPL PHPPPVFNFP MNQREYHMNG FFEAPPPGSS AYNNTANQAR FGSNSSSLPC SISMLDEYLF SQMQQPN

Best Arabidopsis Sequence Match ( AT2G03060.3 )
(BLAST)

001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQMQQP N

Arabidopsis Description

AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.