Factsheet for Bra004393.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95922	Canola	mitochondrion	99.71	95.34
CDY40939	Canola	golgi, mitochondrion, plasma membrane, plastid	94.84	79.38
AT1G69540.2	Thale cress	nucleus	71.63	68.12
KRH50568	Soybean	nucleus	46.42	46.02
GSMUA_Achr11P...	Banana	nucleus	28.94	44.3
KRG89584	Soybean	nucleus	44.7	42.16
Bra017404.1-P	Field mustard	nucleus	45.27	41.69
Bra024792.1-P	Field mustard	nucleus	43.27	40.05
GSMUA_Achr2P01740_001	Banana	nucleus	38.11	39.0
GSMUA_Achr3P24170_001	Banana	nucleus	39.26	38.38
KXG29049	Sorghum	nucleus	39.83	36.68
TraesCS4A01G169000.1	Wheat	nucleus	40.4	36.43
HORVU4Hr1G032440.7	Barley	nucleus	40.4	36.43
TraesCS4B01G150200.1	Wheat	nucleus	40.4	36.25
TraesCS4D01G147000.1	Wheat	nucleus	40.4	36.25
Bra031049.1-P	Field mustard	nucleus	39.26	35.86
Os11t0658700-01	Rice	nucleus	40.11	35.71
KRH70750	Soybean	nucleus	22.64	34.96
Bra025685.1-P	Field mustard	nucleus	36.68	33.77
KRH74891	Soybean	endoplasmic reticulum, golgi, mitochondrion, vacuole	35.24	31.95
Bra016544.1-P	Field mustard	nucleus	27.51	31.37
Bra015645.1-P	Field mustard	nucleus	16.91	28.23
Bra011763.1-P	Field mustard	mitochondrion	12.61	25.14
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	30.66	21.79
Bra015643.1-P	Field mustard	nucleus	19.77	20.97
Bra016386.1-P	Field mustard	nucleus	18.62	20.9
Bra012308.1-P	Field mustard	nucleus	20.06	20.9

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra004393	EnsemblPlants:Bra004393.1	EnsemblPlants:Bra004393.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	UniProt:M4CJK9	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF169	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000254189B
SEG:seg	:	:	:	:	:

Description

AT1G69540 (E=2e-132) AGL94 | AGL94 (AGAMOUS-LIKE 94); DNA binding / transcription factor

Coordinates

chrA07:-:18414700..18416348

Molecular Weight (calculated)

40091.7 Da

IEP (calculated)

5.953

GRAVY (calculated)

-0.537

Length

349 amino acids

Sequence
(BLAST)

001: MGRVKLKIKK LDSINARQAT YCKRKNGIMK KAKELSILCD IDVVLLMFSP AGKPSLCTGE HSIGEVIGKF SQLAPQERAK RKLDNLEALK KTFMKLDHDV
101: NISEFLERSK PTVEVVSEQV RFLQKHLSEI HTRLSYWTEV EKVDSIDDLQ QLENSIRQSL YQIRVHKENV LQHQQQQLMS IECKNELQSD IDLDFGIDIE
201: QQLENFSWVR TDENMKAPLK EEEDPNLQFY HTYKELTCSA SSSLESYSGL FGIKTPKLET GSIPGTSVDP NLQYSNLSFL NDPKLQQLAE WNLLGSPADY
301: YVSQILEASY RPQFGGNWPS SEMSNYPFTV FDDPLLSRVK QRFCSSSQF

Best Arabidopsis Sequence Match ( AT1G69540.1 )
(BLAST)

001: MGRVKLKIKK LQNMNGRQCT YTKRRHGIMK KAKELSILCD IDVVLLMFSP MGKASICIGK HSIGEVIAKF AQLSPQERAK RKLENLEALR KTFMKANHDI
101: DISKFLDRIS TPTVEVLSEK IRFLQTQLSD IHTRLSYWTD VDNIDSVDVL QQLEHSLRQS LAQIYGRKAS MPQRQQQQLM SSQCKNQLQT EIDIDFGMEM
201: EQQLENFSWV RTDENMNVPI EEEDPNLQLH HMYKDITCSA SSALGNYSGL FSKSSDILQK LETGSIPGTS ADPNQQFSNL SFLNDQKLKQ LAEWNLLGSP
301: ADYYVSQILE ASYKPQIGGK NNGASSETLP YVAVFDDPLY FWPN

Arabidopsis Description

AGL94AGAMOUS-like 94 [Source:TAIR;Acc:AT1G69540]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.