CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50568	Soybean	nucleus	51.77	33.24
KRG89584	Soybean	nucleus	48.67	29.73
KRH74891	Soybean	endoplasmic reticulum, golgi, mitochondrion, vacuole	43.81	25.71
GSMUA_Achr3P24170_001	Banana	nucleus	37.61	23.81
KXG29049	Sorghum	nucleus	39.38	23.48
KRH03491	Soybean	nucleus	36.28	23.16
TraesCS4D01G147000.1	Wheat	nucleus	39.38	22.88
TraesCS4B01G150200.1	Wheat	nucleus	39.38	22.88
KRH56901	Soybean	nucleus	34.07	22.78
HORVU4Hr1G032440.7	Barley	nucleus	38.94	22.74
Bra004393.1-P	Field mustard	nucleus	34.96	22.64
TraesCS4A01G169000.1	Wheat	nucleus	38.5	22.48
GSMUA_Achr2P01740_001	Banana	nucleus	33.63	22.29
AT1G69540.2	Thale cress	nucleus	35.84	22.07
GSMUA_Achr11P...	Banana	nucleus	22.12	21.93
CDX95922	Canola	mitochondrion	34.96	21.64
Os11t0658700-01	Rice	nucleus	37.17	21.43
CDY40939	Canola	golgi, mitochondrion, plasma membrane, plastid	34.96	18.94
KRH61376	Soybean	nucleus	24.78	17.23
KRH18859	Soybean	nucleus	24.78	16.77
KRH16660	Soybean	nucleus	23.45	15.27
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	31.86	14.66

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A0R0KVD4	EMBL:ACUP02000794	EnsemblPlantsGene:GLYMA_02G109000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRH70750	ProteinID:KRH70750	ProteinID:KRH70750.1	PFAM:PF00319
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF169	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	TMHMM:TMhelix	UniParc:UPI0006EDAB7C	:	:

Description

hypothetical protein

Coordinates

chr2:+:10440415..10444977

Molecular Weight (calculated)

25581.1 Da

IEP (calculated)

9.268

GRAVY (calculated)

-0.287

Length

226 amino acids

Sequence
(BLAST)

001: MGRVKRKIKR LENTNCRLAT YAKRKNGIMK KAIGLSILCD VDIILIMFSP SGKPSLCRRK LSIHIPELIF DLCDQARLLQ THINEIHKRL SYWTDLGKSN
101: SENIQKQQFA SLQCNNPCLK IRDTDIEGST SYSFGSHANY LGSSNKTDIS ISKQENGVLG DMRSTSPMRL QFSYLPNNFN LLNDMDIIIM TLNQGLISTS
201: GPCVVTMFDE HLYTQPSFPP MHIGFT

Best Arabidopsis Sequence Match ( AT2G03060.1 )
(BLAST)

001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQMQQP N

Arabidopsis Description

AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.