CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086843	Potato	nucleus	13.23	52.44
VIT_18s0001g09540.t01	Wine grape	nucleus	45.54	45.96
Solyc04g078300.2.1	Tomato	nucleus	39.69	38.62
Bra011763.1-P	Field mustard	mitochondrion	18.77	34.86
AT4G37435.1	Thale cress	nucleus	19.08	33.33
KRH18859	Soybean	nucleus	32.31	31.44
PGSC0003DMT400094997	Potato	nucleus	15.08	31.01
KRH16660	Soybean	nucleus	31.69	29.68
CDX69305	Canola	nucleus	18.46	29.56
KRH70750	Soybean	nucleus	17.23	24.78
KRH56901	Soybean	nucleus	24.62	23.67
KRH03491	Soybean	nucleus	23.38	21.47
KRH50568	Soybean	nucleus	20.92	19.32
KRG89584	Soybean	nucleus	20.62	18.11
KRH74891	Soybean	endoplasmic reticulum, golgi, mitochondrion, vacuole	16.0	13.51

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02002162	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G043800	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:K7KI18	EnsemblPlants:KRH61376	ProteinID:KRH61376	ProteinID:KRH61376.1
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF224
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00023C102B	:

Description

hypothetical protein

Coordinates

chr4:-:3504133..3509442

Molecular Weight (calculated)

36690.6 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.506

Length

325 amino acids

Sequence
(BLAST)

001: MGRVKLPIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRATFFSGN KSIEEILERY VNLSEGEHGR MHNKEHIQKL LSKLKDEAGQ
101: ICQAPSSMTS DSQIEDLRRE IFTCKSQLEE MEKRLRIFEG DPSEITTLSE AEYREYVLRD TLKQVQLRKC VLEEYNSHAT HSPQVHAAKT VDVNGFISRA
201: SKNPVDWFPQ GDPLHVQTLN FANVYDTALV RDQQSHHCTV VDMLTPTSTL LHSANMDLNG QMNPRSSLDA GISNTLHPQF GQAIHTNSSS WQHLNPLGSR
301: TLSIAETREV QLLNSVFLNL PGQTS

Best Arabidopsis Sequence Match ( AT1G77980.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ

Arabidopsis Description

AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.