Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0129g00650.t01 | Wine grape | cytosol | 18.28 | 54.84 |
| Bra011763.1-P | Field mustard | mitochondrion | 45.16 | 48.0 |
| CDX69305 | Canola | nucleus | 44.09 | 40.39 |
| PGSC0003DMT400086843 | Potato | nucleus | 17.2 | 39.02 |
| AT2G26320.1 | Thale cress | nucleus | 17.2 | 29.36 |
| PGSC0003DMT400094997 | Potato | nucleus | 19.35 | 22.78 |
| AT1G77950.4 | Thale cress | nucleus | 29.57 | 21.83 |
| KRH61376 | Soybean | nucleus | 33.33 | 19.08 |
| Solyc04g078300.2.1 | Tomato | nucleus | 33.33 | 18.56 |
| AT1G22130.1 | Thale cress | nucleus | 29.57 | 16.42 |
| AT1G77980.1 | Thale cress | nucleus | 28.49 | 15.96 |
| AT1G18750.3 | Thale cress | nucleus | 30.11 | 13.56 |
| AT2G03060.2 | Thale cress | nucleus | 27.42 | 13.21 |
| AT1G69540.2 | Thale cress | nucleus | 25.27 | 12.81 |
Protein Annotations
| MapMan:15.5.14 | EntrezGene:28720212 | Gene3D:3.40.1810.10 | UniProt:A0A1P8B5J4 | ProteinID:ANM66859.1 | ArrayExpress:AT4G37435 |
| EnsemblPlantsGene:AT4G37435 | EnsemblPlants:AT4G37435.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| RefSeq:NP_001328728.1 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | TMHMM:TMhelix | UniParc:UPI0008493E57 |
Description
MADS-box transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B5J4]
Coordinates
chr4:-:17599027..17600638
Molecular Weight (calculated)
21973.9 Da
IEP (calculated)
10.039
GRAVY (calculated)
-0.515
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKIQIKR INDRQQRNIA FAKRKNGLLK KAYELFVLCN VPVALILFSP SGKLFVFYAK ERPEEIICKF LARAVRTRLP HEPNIQRLVM QMRSETKCSD
101: ESLDDGLRYL IQPKEIEDEI EEVNARLAEV EKQLERFLEI PDQWESLAEL KRREEDFQKT LDIVQSRKRD LKPGNFVSGI KKFLRI
101: ESLDDGLRYL IQPKEIEDEI EEVNARLAEV EKQLERFLEI PDQWESLAEL KRREEDFQKT LDIVQSRKRD LKPGNFVSGI KKFLRI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.