Factsheet for Bra026543.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004007.1-P
Bra004361.1-P
Bra004928.1-P
Bra009436.1-P
Bra009911.1-P
Bra012997.1-P
Bra015643.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra029347.1-P
Bra035952.1-P
Bra038326.1-P
Bra039324.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	Bra009911.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020524.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020525.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020550.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020552.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra009911.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020524.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020525.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020550.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020552.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra009436.1-P	AT1G46408.1	15805477
AT2G03710.1	Bra020600.1-P	AT1G48150.1	15805477
AT2G03710.1	Bra004007.1-P	AT1G69120.1	15805477
AT2G03710.1	Bra004361.1-P	AT1G69120.1	15805477
AT2G03710.1	Bra038326.1-P	AT1G69120.1	15805477
AT2G03710.1	Bra015643.1-P	AT1G77980.1	15805477
AT2G03710.1	Bra000393.1-P	AT2G45660.1	15805477
AT2G03710.1	Bra004928.1-P	AT2G45660.1	15805477
AT2G03710.1	Bra039324.1-P	AT2G45660.1	15805477
AT2G03710.1	Bra039723.1-P	AT4G14640.1	17360592
AT2G03710.1	Bra012997.1-P	AT5G60910.1	15805477
AT2G03710.1	Bra029347.1-P	AT5G60910.1	15805477
AT2G03710.1	Bra035952.1-P	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49686	Canola	nucleus	64.31	100.0
CDY45709	Canola	nucleus	63.2	98.27
Bra025126.1-P	Field mustard	nucleus	83.27	87.16
AT2G03710.1	Thale cress	nucleus	82.9	86.43
Bra017376.1-P	Field mustard	nucleus	76.95	85.19
TraesCS7B01G021100.1	Wheat	nucleus	18.96	77.27
TraesCS7B01G020900.1	Wheat	nucleus	18.96	73.91
VIT_01s0011g00110.t01	Wine grape	nucleus	56.51	62.55
KRH70973	Soybean	nucleus	53.16	58.61
KRH75123	Soybean	nucleus	52.79	57.72
Bra008674.1-P	Field mustard	nucleus	53.53	57.14
Bra006322.1-P	Field mustard	nucleus	52.79	56.8
Solyc04g005320.2.1	Tomato	nucleus	50.19	56.72
PGSC0003DMT400072891	Potato	nucleus	50.56	56.2
Solyc05g012020.2.1	Tomato	nucleus	50.19	55.79
Bra039170.1-P	Field mustard	nucleus	49.07	52.8
GSMUA_Achr8P28100_001	Banana	nucleus	46.84	52.5
Bra021470.1-P	Field mustard	nucleus	49.07	52.38
Zm00001d045231_P002	Maize	nucleus	42.75	51.11
EER89250	Sorghum	nucleus	42.75	51.11
TraesCS4B01G245700.1	Wheat	nucleus	40.52	50.46
GSMUA_Achr7P26700_001	Banana	nucleus	44.61	50.42
Bra030032.1-P	Field mustard	nucleus	46.47	49.6
GSMUA_Achr4P14460_001	Banana	nucleus	44.24	49.58
OQU93000	Sorghum	nucleus	44.61	49.38
GSMUA_Achr3P15930_001	Banana	nucleus	43.87	49.17
TraesCS7D01G120500.1	Wheat	nucleus	41.26	48.9
Bra010955.1-P	Field mustard	nucleus	44.24	48.77
TraesCS4D01G243700.1	Wheat	nucleus	40.52	48.44
Bra032814.1-P	Field mustard	nucleus	45.35	48.22
TraesCS7A01G122100.1	Wheat	nucleus	40.52	48.02
TraesCS7B01G020800.1	Wheat	nucleus	40.52	48.02
Os06t0162800-01	Rice	nucleus	40.15	48.0
Os03t0215400-01	Rice	nucleus	45.72	47.86
TraesCS7A01G122000.1	Wheat	nucleus	39.78	47.14
GSMUA_Achr2P06250_001	Banana	nucleus	39.41	46.9
Zm00001d028217_P001	Maize	nucleus	44.61	46.51
Zm00001d048082_P001	Maize	nucleus	43.49	46.43
TraesCS4D01G245200.1	Wheat	nucleus	42.75	46.37
Bra004361.1-P	Field mustard	nucleus	32.34	46.03
TraesCS4B01G245800.1	Wheat	nucleus	42.01	45.75
TraesCS7D01G120600.1	Wheat	nucleus	38.29	45.37
TraesCS4A01G028200.1	Wheat	nucleus	39.03	45.26
TraesCS4D01G276100.1	Wheat	nucleus	39.78	44.4
Bra025411.1-P	Field mustard	nucleus	29.0	44.32
TraesCS4A01G058900.1	Wheat	nucleus	27.88	44.12
TraesCS4A01G028100.1	Wheat	nucleus	39.03	43.39
Bra004927.1-P	Field mustard	nucleus	38.66	42.98
TraesCS4B01G277800.1	Wheat	nucleus	38.29	41.7
HORVU7Hr1G025700.6	Barley	nucleus	41.26	40.22
Bra000392.1-P	Field mustard	nucleus	37.17	38.91
Bra014454.1-P	Field mustard	nucleus	32.34	37.83
Bra038326.1-P	Field mustard	nucleus	35.69	37.5
Bra012997.1-P	Field mustard	nucleus	33.46	37.34
Bra035952.1-P	Field mustard	nucleus	33.46	37.34
Bra029347.1-P	Field mustard	nucleus	33.09	37.08
Bra011021.1-P	Field mustard	nucleus	34.94	37.01
Bra037895.1-P	Field mustard	nucleus	30.86	36.09
Bra000696.1-P	Field mustard	nucleus	30.86	35.93
HORVU4Hr1G067680.14	Barley	nucleus	37.92	35.92
Bra036201.1-P	Field mustard	nucleus	33.09	35.89
Bra013364.1-P	Field mustard	nucleus	33.09	35.32
Bra012564.1-P	Field mustard	nucleus	32.71	35.06
Bra004007.1-P	Field mustard	nucleus	35.32	35.06
TraesCS4A01G078700.1	Wheat	nucleus	27.88	34.25
Bra004716.1-P	Field mustard	nucleus	30.86	34.02
Bra007419.1-P	Field mustard	nucleus	30.86	33.88
Bra030222.1-P	Field mustard	nucleus	28.25	33.48
Bra010623.1-P	Field mustard	nucleus	26.39	33.18
Bra014552.1-P	Field mustard	nucleus	29.74	32.26
Bra039921.1-P	Field mustard	nucleus	27.14	32.16
TraesCS7B01G021000.1	Wheat	nucleus	22.3	32.09
Bra011797.1-P	Field mustard	nucleus	26.77	31.58
Bra017638.1-P	Field mustard	nucleus	27.14	30.42
Bra003356.1-P	Field mustard	nucleus	29.74	29.3
Bra011509.1-P	Field mustard	nucleus	26.02	24.14
Bra040719.1-P	Field mustard	nucleus	14.5	22.94

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra026543	EnsemblPlants:Bra026543.1	EnsemblPlants:Bra026543.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4ECN3
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF352	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025464F3	SEG:seg	:	:

Description

AT2G03710 (E=3e-091) SEP4, AGL3 | SEP4 (SEPALLATA 4); DNA binding / transcription factor

Coordinates

chrA02:-:20117676..20119771

Molecular Weight (calculated)

30632.3 Da

IEP (calculated)

9.218

GRAVY (calculated)

-0.828

Length

269 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMTKTVEK YRKHSYATMD PNQSAKDLQE KYQDYLMLKS
101: KVESLQHSQR HLLGEEIAGM GVNELEQLEH QVDASLKQIR SRKAGAMLDQ LSDLKTKEEM LLETNRDLRR KLEESDAALT QSMWGAASAG EHSHQQQQQY
201: HQQQQQQQHQ QGMSSYQANP PSQENGFFRP LHGNVALQMS HYNPGVTNAS NSATTSQNVI NGFFPGWML

Best Arabidopsis Sequence Match ( AT2G03710.2 )
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV

Arabidopsis Description

AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.