Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045231_P002 | Maize | nucleus | 95.11 | 95.11 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 26.67 | 90.91 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 26.22 | 85.51 |
| Os06t0162800-01 | Rice | nucleus | 85.33 | 85.33 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 83.11 | 82.38 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 83.11 | 82.38 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 82.67 | 81.94 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 80.44 | 79.74 |
| OQU93000 | Sorghum | nucleus | 75.56 | 69.96 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 67.11 | 66.52 |
| HORVU7Hr1G025700.6 | Barley | nucleus | 79.11 | 64.49 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 56.89 | 53.78 |
| PGSC0003DMT400063315 | Potato | nucleus | 58.22 | 53.25 |
| EER97012 | Sorghum | nucleus | 57.33 | 53.09 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 56.44 | 52.92 |
| Solyc03g114840.2.1 | Tomato | nucleus | 57.78 | 52.85 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 56.89 | 52.03 |
| KXG37536 | Sorghum | nucleus | 55.11 | 51.45 |
| KRH70973 | Soybean | nucleus | 55.11 | 50.82 |
| EES15309 | Sorghum | nucleus | 53.78 | 50.21 |
| KRH75123 | Soybean | nucleus | 54.22 | 49.59 |
| KXG26975 | Sorghum | nucleus | 48.44 | 46.38 |
| EES07448 | Sorghum | nucleus | 50.67 | 44.71 |
| EER90862 | Sorghum | nucleus | 48.0 | 44.08 |
| Bra025126.1-P | Field mustard | nucleus | 49.78 | 43.58 |
| CDY02978 | Canola | nucleus | 48.89 | 42.97 |
| CDY51202 | Canola | nucleus | 48.89 | 42.8 |
| Bra026543.1-P | Field mustard | nucleus | 51.11 | 42.75 |
| AT2G03710.1 | Thale cress | nucleus | 48.89 | 42.64 |
| CDY04164 | Canola | nucleus | 48.44 | 42.25 |
| EER97510 | Sorghum | nucleus | 45.78 | 40.71 |
| EER95753 | Sorghum | nucleus | 46.22 | 38.52 |
| Bra017376.1-P | Field mustard | nucleus | 39.56 | 36.63 |
| CDY33113 | Canola | nucleus | 48.89 | 35.6 |
| OQU80503 | Sorghum | nucleus | 36.0 | 35.37 |
| KXG23502 | Sorghum | nucleus | 34.67 | 34.98 |
| OQU85202 | Sorghum | nucleus | 36.89 | 34.58 |
| OQU85464 | Sorghum | nucleus | 36.89 | 34.3 |
| EES15827 | Sorghum | nucleus | 39.56 | 33.09 |
| OQU81712 | Sorghum | nucleus | 35.11 | 33.05 |
| EES01878 | Sorghum | nucleus | 39.56 | 32.13 |
| EES00105 | Sorghum | nucleus | 37.78 | 31.6 |
| CDY49686 | Canola | nucleus | 23.11 | 30.06 |
| CDY45709 | Canola | nucleus | 23.11 | 30.06 |
| OQU77603 | Sorghum | nucleus | 38.67 | 29.79 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:8070870 | UniProt:C5Z4T9 | ncoils:Coil | EnsemblPlants:EER89250 |
| ProteinID:EER89250 | ProteinID:EER89250.1 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF206 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3010G050500 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0001A8962C | RefSeq:XP_002437883.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:3894533..3900414
Molecular Weight (calculated)
25948.9 Da
IEP (calculated)
7.459
GRAVY (calculated)
-0.701
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLFEFSTS SCMYKTLERY RSCNFASEAS APLEAELNNY QEYLKLKTKV
101: EFLQTTQRNL LGEDLGPLNV KELEQLENQI EISLKHIRSS KNQQMLDQLF DLKRKEQQLQ DANKDLRRKI QETSEENVLR LSCQDIGCSG SSGHGDEANQ
201: ERLHLALDPS LHIGYQAYMD HMNND
101: EFLQTTQRNL LGEDLGPLNV KELEQLENQI EISLKHIRSS KNQQMLDQLF DLKRKEQQLQ DANKDLRRKI QETSEENVLR LSCQDIGCSG SSGHGDEANQ
201: ERLHLALDPS LHIGYQAYMD HMNND
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.