CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034047_P007	Maize	nucleus	94.61	95.0
Os03t0753100-01	Rice	nucleus	80.91	81.59
TraesCS5B01G396700.1	Wheat	nucleus	78.84	80.51
HORVU5Hr1G095710.1	Barley	nucleus	78.84	80.17
TraesCS5D01G401700.1	Wheat	nucleus	78.42	80.08
TraesCS5A01G391800.1	Wheat	nucleus	77.59	78.57
EER89250	Sorghum	nucleus	51.45	55.11
Solyc12g038510.1.1	Tomato	nucleus	56.02	54.0
OQU93000	Sorghum	nucleus	53.94	53.5
EER97012	Sorghum	nucleus	50.21	49.79
EES15309	Sorghum	nucleus	48.13	48.13
EES07448	Sorghum	nucleus	47.3	44.71
KXG26975	Sorghum	nucleus	43.15	44.26
EER90862	Sorghum	nucleus	43.15	42.45
EER97510	Sorghum	nucleus	43.98	41.9
EER95753	Sorghum	nucleus	43.15	38.52
KXG23502	Sorghum	nucleus	34.02	36.77
OQU85464	Sorghum	nucleus	34.02	33.88
OQU85202	Sorghum	nucleus	33.61	33.75
OQU81712	Sorghum	nucleus	33.2	33.47
OQU80503	Sorghum	nucleus	29.88	31.44
EES15827	Sorghum	nucleus	34.44	30.86
EES01878	Sorghum	nucleus	35.27	30.69
EES00105	Sorghum	nucleus	34.02	30.48
OQU77603	Sorghum	nucleus	36.93	30.48

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1B6QI01	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EnsemblPlants:KXG37536	ProteinID:KXG37536	ProteinID:KXG37536.1
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF162	SMART:SM00432	EnsemblPlantsGene:SORBI_3001G086400	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0003C6CB1D	:	:

Description

hypothetical protein

Coordinates

chr1:+:6679217..6686323

Molecular Weight (calculated)

27479.7 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.632

Length

241 amino acids

Sequence
(BLAST)

001: MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS SNLLKTLERY QRYIYASADA AVPSSDEMQN NYQEYVNLKA
101: RVEVLQHSQR NLLGEDLAPL SPSELDQLES QVDKTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLDEFEAEAA SPPQLAWQDG GGMLSHDPPQ
201: PEHFFQALES NPSLQPTYHT MDMNQQPVPS PGSCYPPDWM A

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.